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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ning, Y."

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Search Summary

This query matches 39 Structures.

Refinements

Structure Determination Methodology

experimental (39)

Scientific Name of Source Organism

	Homo sapiens (35)
	Bacillus subtilis subsp. subtilis str. 168 (2)
	Geobacillus kaustophilus HTA426 (2)
	Mus musculus (2)

Taxonomy

	Eukaryota (37)
	Bacteria (2)

Experimental Method

X-RAY DIFFRACTION (39)

Polymer Entity Type

Protein (39)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (15)
	2.0 - 2.5 (8)
	2.5 - 3.0 (8)
	3.0 - 3.5 (7)

Release Date

	2010 - 2014 (6)
	2015 - 2019 (4)
	2020 - 2024 (29)

Enzyme Classification Name

Oxidoreductases (3)

Symmetry Type

Asymmetric (39)

SCOP Classification

	All beta proteins (18)
	Artifacts (18)
	Alpha and beta proteins (a+b) (16)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 39 Structures

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4ACR \| pdb_00004acr	Download File View File

Crystal structure of N-glycosylated, C-terminally truncated human glypican-1

Svensson, G., Awad, W., Mani, K., Logan, D.T.

(2012) J Biological Chem 287: 14040

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	GLYPICAN-1 (protein)
Unique Ligands	NAG

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4AD7 \| pdb_00004ad7	Download File View File

Crystal structure of full-length N-glycosylated human glypican-1

Svensson, G., Awad, W., Mani, K., Logan, D.T.

(2012) J Biological Chem 287: 14040

Released	2012-03-21
Method	X-RAY DIFFRACTION 2.945 Å
Organisms	Homo sapiens
Macromolecule	GLYPICAN-1 (protein)
Unique Ligands	NAG

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4BCY \| pdb_00004bcy	Download File View File

Monomeric Human Cu,Zn Superoxide dismutase, mutation H43F

Awad, W., Saraboji, K., Danielsson, J., Lang, L., Kurnik, M., Marklund, S.L., Oliveberg, M., Logan, D.T.

(2013) Proc Natl Acad Sci U S A 110: 3829

Released	2013-02-27
Method	X-RAY DIFFRACTION 1.272 Å
Organisms	Homo sapiens
Macromolecule	SUPEROXIDE DISMUTASE [CU-ZN] (protein)
Unique Ligands	CD, CL, CU, ZN

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4BCZ \| pdb_00004bcz	Download File View File

Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form.

Saraboji, K., Awad, W., Danielsson, J., Lang, L., Kurnik, M., Marklund, S.L., Oliveberg, M., Logan, D.T.

(2013) Proc Natl Acad Sci U S A 110: 3829

Released	2013-02-27
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens
Macromolecule	SUPEROXIDE DISMUTASE [CU-ZN] (protein)

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4BD4 \| pdb_00004bd4	Download File View File

Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, mutant H43F

Awad, W., Saraboji, K., Danielsson, J., Lang, L., Kurnik, M., Marklund, S.L., Oliveberg, M., Logan, D.T.

(2013) Proc Natl Acad Sci U S A 110: 3829

Released	2013-02-27
Method	X-RAY DIFFRACTION 2.78 Å
Organisms	Homo sapiens
Macromolecule	SUPEROXIDE DISMUTASE [CU-ZN] (protein)
Unique Ligands	GOL

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4BWE \| pdb_00004bwe	Download File View File

Crystal structure of C-terminally truncated glypican-1 after controlled dehydration to 86 percent relative humidity

Awad, W., Svensson Birkedal, G., Thunnissen, M.M.G.M., Mani, K., Logan, D.T.

(2013) Acta Crystallogr D Biol Crystallogr 69: 2524-2533

Released	2013-12-18
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Homo sapiens
Macromolecule	Glypican-1 (protein)
Unique Ligands	CA, NAG

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4YWT \| pdb_00004ywt	Download File View File

Crystal structure of full-length glypican-1 core protein after controlled crystal dehydration to 87% relative humidity

Awad, W., Mani, K., Logan, D.T.

(2015) J Biological Chem 290: 22991-23008

Released	2015-07-29
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Homo sapiens
Macromolecule	Glypican-1 (protein)
Unique Ligands	CA, NAG

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6GHB \| pdb_00006ghb	Download File View File

Crystal structure of Spx in complex with YjbH (oxidized)

Awad, W., Logan, D.T., von Wachenfeldt, C.

(2019) Structure 27: 923

Released	2019-04-24
Method	X-RAY DIFFRACTION 3.104 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168 Geobacillus kaustophilus HTA426
Macromolecule	Regulatory protein Spx (protein) UPF0413 protein GK0824 (protein)
Unique Ligands	MG

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6GHO \| pdb_00006gho	Download File View File

Crystal structure of Spx in complex with YjbH

Awad, W., Logan, D.T., von Wachenfeldt, C.

(2019) Structure 27: 923

Released	2019-04-24
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168 Geobacillus kaustophilus HTA426
Macromolecule	Regulatory protein Spx (protein) UPF0413 protein GK0824 (protein)
Unique Ligands	CL

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6MWR \| pdb_00006mwr	Download File View File

Recognition of MHC-like molecule

Le Nours, J., Rossjohn, J.

(2019) Science 366: 1522-1527

Released	2019-12-18
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Delta chain of T cell receptor (protein) G7 Gamma chain T cell receptor (protein) Major histocompatibility complex class I-related gene protein (protein)
Unique Ligands	2LJ, NAG

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6PUC \| pdb_00006puc	Download File View File

Structure of human MAIT A-F7 TCR in complex with human MR1-5-OP-RU

Awad, W., Rossjohn, J.

(2020) Nat Immunol 21: 400-411

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Human TCR alpha chain (protein) Human TCR beta chain (protein) Major histocompatibility complex class I-related gene protein (protein)
Unique Ligands	CL, GOL, NA, Q87

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6PUD \| pdb_00006pud	Download File View File

Structure of human MAIT A-F7 TCR in complex with human MR1-5'OH-Pentyl-5-OP-U

Awad, W., Rossjohn, J.

(2020) Nat Immunol 21: 400-411

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Human TCR alpha chain (protein) Human TCR beta chain (protein) Major histocompatibility complex class I-related gene protein (protein)
Unique Ligands	OYD

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6PUE \| pdb_00006pue	Download File View File

Structure of human MAIT A-F7 TCR in complex with human MR1-4'D-5-OP-RU

Awad, W., Rossjohn, J.

(2020) Nat Immunol 21: 400-411

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Human TCR alpha chain (protein) Human TCR beta chain (protein) Major histocompatibility complex class I-related gene protein (protein)
Unique Ligands	GOL, NA, Q7J

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6PUF \| pdb_00006puf	Download File View File

Structure of human MAIT A-F7 TCR in complex with human MR1-5'D-5-OP-RU

Awad, W., Rossjohn, J.

(2020) Nat Immunol 21: 400-411

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Human TCR alpha chain (protein) Human TCR beta chain (protein) Major histocompatibility complex class I-related gene protein (protein)
Unique Ligands	2LJ, GOL, NA

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6PUG \| pdb_00006pug	Download File View File

Structure of human MAIT A-F7 TCR in complex with human MR1-2`OH-Ethyl-5-OP-U

Awad, W., Rossjohn, J.

(2020) Nat Immunol 21: 400-411

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Human TCR alpha chain (protein) Human TCR beta chain (protein) Major histocompatibility complex class I-related gene protein (protein)
Unique Ligands	CL, GOL, NA, OZD

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6PUH \| pdb_00006puh	Download File View File

Structure of human MAIT A-F7 TCR in complex with human MR1-Ribityl-less

Awad, W., Keller, A.N., Rossjohn, J.

(2020) Nat Immunol 21: 400-411

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Human TCR alpha chain (protein) Human TCR beta chain (protein) Major histocompatibility complex class I-related gene protein (protein)
Unique Ligands	NA, OYG

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6PUI \| pdb_00006pui	Download File View File

Structure of human MAIT A-F7 TCR in complex with human MR1-4'OH-Butyl-5-OP-U

Awad, W., Keller, A.N., Rossjohn, J.

(2020) Nat Immunol 21: 400-411

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Human TCR alpha chain (protein) Human TCR beta chain (protein) Major histocompatibility complex class I-related gene protein (protein)
Unique Ligands	GOL, NA, Q7P

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6PUJ \| pdb_00006puj	Download File View File

Structure of human MAIT A-F7 TCR in complex with human MR1-3`OH-Propyl-5-OP-U

Awad, W., Keller, A.N., Rossjohn, J.

(2020) Nat Immunol 21: 400-411

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Human TCR alpha chain (protein) Human TCR beta chain (protein) Major histocompatibility complex class I-related gene protein (protein)
Unique Ligands	CL, GOL, NA, Q7S

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6PUK \| pdb_00006puk	Download File View File

Structure of human MAIT A-F7 TCR in complex with human MR1-JYM72

Awad, W., Keller, A.N., Rossjohn, J.

(2020) Nat Immunol 21: 400-411

Released	2020-02-19
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Human TCR beta chain (protein) Major histocompatibility complex class I-related gene protein (protein) TRA@ protein (protein)
Unique Ligands	ACT, GOL, NA, OYV

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6PUL \| pdb_00006pul	Download File View File

Structure of human MAIT A-F7 TCR in complex with human MR1 3'D-5-OP-RU

Awad, W., Keller, A.N., Rossjohn, J.

(2020) Nat Immunol 21: 400-411

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Human TCR beta chain (protein) Major histocompatibility complex class I-related gene protein (protein) TRA@ protein (protein)
Unique Ligands	ACT, GOL, NA, Q81

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6PUM \| pdb_00006pum	Download File View File

Structure of human MAIT A-F7 TCR in complex with human MR1-2'D-5-OP-RU

Awad, W., Keller, A.N., Rossjohn, J.

(2020) Nat Immunol 21: 400-411

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Major histocompatibility complex class I-related gene protein (protein) TCR alpha chain (protein) TCR beta chain (protein)
Unique Ligands	GOL, NA, Q84

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6PVC \| pdb_00006pvc	Download File View File

Structure of human MAIT A-F7 TCR in complex with human MR1-DB28

Awad, W., Rossjohn, J.

(2020) Proc Natl Acad Sci U S A 117: 10465-10475

Released	2020-04-01
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Human TCR alpha chain (protein) Human TCR beta chain (protein) Major histocompatibility complex class I-related gene protein (protein)
Unique Ligands	ACT, GOL, NA, P1J

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6PVD \| pdb_00006pvd	Download File View File

Structure of human MAIT A-F7 TCR in complex with human MR1-NV18.1

Awad, W., Rossjohn, J.

(2020) Proc Natl Acad Sci U S A 117: 10465-10475

Released	2020-04-01
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Human TCR alpha chain (protein) Human TCR beta chain (protein) Major histocompatibility complex class I-related gene protein (protein)
Unique Ligands	ACT, GOL, N18, NA

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6W9U \| pdb_00006w9u	Download File View File

Structure of human MAIT A-F7 TCR in complex with patient MR1-R9H-Ac-6-FP

Awad, W., Rossjohn, J.

(2020) Sci Immunol 5:

Released	2020-08-05
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Major histocompatibility complex class I-related gene protein (protein) TCR-alpha chain (protein) TCR-beta chain (protein)
Unique Ligands	CL, GOL, TKG

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6W9V \| pdb_00006w9v	Download File View File

Structure of human MAIT A-F7 TCR in complex with patient MR1-R9H without ligand

Awad, W., Rossjohn, J.

(2020) Sci Immunol 5:

Released	2020-08-05
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Major histocompatibility complex class I-related gene protein (protein) TCR-alpha chain (protein) TCR-beta chain (protein)
Unique Ligands	ACT, GOL

1 to 25 of 39 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4ACR | pdb_00004acr

4AD7 | pdb_00004ad7

4BCY | pdb_00004bcy

4BCZ | pdb_00004bcz

4BD4 | pdb_00004bd4

4BWE | pdb_00004bwe

4YWT | pdb_00004ywt

6GHB | pdb_00006ghb

6GHO | pdb_00006gho

6MWR | pdb_00006mwr

6PUC | pdb_00006puc

6PUD | pdb_00006pud

6PUE | pdb_00006pue

6PUF | pdb_00006puf

6PUG | pdb_00006pug

6PUH | pdb_00006puh

6PUI | pdb_00006pui

6PUJ | pdb_00006puj

6PUK | pdb_00006puk

6PUL | pdb_00006pul

6PUM | pdb_00006pum

6PVC | pdb_00006pvc

6PVD | pdb_00006pvd

6W9U | pdb_00006w9u

6W9V | pdb_00006w9v