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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Parisini, E."

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Search Summary

This query matches 36 Structures.

Refinements

Structure Determination Methodology

experimental (36)

Scientific Name of Source Organism

	Homo sapiens (16)
	Aspergillus fumigatus (4)
	Parastagonospora nodorum SN15 (4)
	Allochromatium vinosum (2)
	Escherichia coli IAI1 (2)
	Mus musculus (2)
	Plasmodium falciparum 3D7 (2)
	Bos taurus (1)
	Escherichia coli (1)
	Scenedesmus fuscus (1)

More...

Taxonomy

	Eukaryota (30)
	Bacteria (6)

Experimental Method

X-RAY DIFFRACTION (36)

Polymer Entity Type

Protein (36)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (6)
	1.5 - 2.0 (16)
	2.0 - 2.5 (9)
	2.5 - 3.0 (4)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (1)
	2005 - 2009 (2)
	2015 - 2019 (16)
	2020 - 2024 (13)

Enzyme Classification Name

	Hydrolases (11)
	Transferases (4)
	Ligases (2)
	Lyases (1)

Symmetry Type

	Asymmetric (16)
	Cyclic (21)

SCOP Classification

	All alpha proteins (11)
	Small proteins (3)
	All beta proteins (5)
	Artifacts (9)
	Alpha and beta proteins (a+b) (2)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 36 Structures

Page 1 of 2

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1AWD \| pdb_00001awd	Download File View File

FERREDOXIN [2FE-2S] OXIDIZED FORM FROM CHLORELLA FUSCA

Sheldrick, G.M.

(1999) Structure 7: 1201-1211

Released	1998-01-14
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Scenedesmus fuscus
Macromolecule	FERREDOXIN (protein)
Unique Ligands	FES

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1B0Y \| pdb_00001b0y	Download File View File

MUTANT H42Q OF HIPIP FROM CHROMATIUM VINOSUM AT 0.93A

Sheldrick, G.M.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1773-1784

Released	1998-12-16
Method	X-RAY DIFFRACTION 0.93 Å
Organisms	Allochromatium vinosum
Macromolecule	PROTEIN (HIPIP) (protein)
Unique Ligands	SF4

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1BLX \| pdb_00001blx	Download File View File

P19INK4D/CDK6 COMPLEX

Brotherton, D.H., Dhanaraj, V., Wick, S., Brizuela, L., Domaille, P.J., Volyanik, E., Xu, X., Parisini, E., Smith, B.O., Archer, S.J., Serrano, M., Brenner, S.L., Blundell, T.L., Laue, E.D.

(1998) Nature 395: 244-250

Released	1999-06-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	CYCLIN-DEPENDENT KINASE 6 (protein) P19INK4D (protein)
Unique Ligands	CA

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1CKU \| pdb_00001cku	Download File View File

AB INITIO SOLUTION AND REFINEMENT OF TWO HIGH POTENTIAL IRON PROTEIN STRUCTURES AT ATOMIC RESOLUTION

Parisini, E., Capozzi, F., Lubini, P., Lamzin, V., Luchinat, C., Sheldrick, G.M.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1773-1784

Released	1999-05-13
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Allochromatium vinosum
Macromolecule	PROTEIN (HIPIP) (protein)
Unique Ligands	SF4

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1RQF \| pdb_00001rqf	Download File View File

Structure of CK2 beta subunit crystallized in the presence of a p21WAF1 peptide

Bertrand, L., Sayed, M.F., Pei, X.-Y., Parisini, E., Dhanaraj, V., Bolanos-Garcia, V.M., Allende, J.E., Blundell, T.L.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1698-1704

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Xenopus laevis
Macromolecule	Casein kinase II beta chain (protein) Disordered segment of Cyclin-dependent kinase inhibitor 1 (protein)
Unique Ligands	UNL, ZN

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2ATP \| pdb_00002atp	Download File View File

Crystal structure of a CD8ab heterodimer

Chang, H.C., Tan, K., Ouyang, J., Parisini, E., Liu, J.H., Le, Y., Wang, X., Reinherz, E.L., Wang, J.H.

(2005) Immunity 23: 661-671

Released	2005-12-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	T-cell surface glycoprotein CD8 alpha chain (protein) T-cell surface glycoprotein CD8 beta chain (protein) artifact linker (protein)
Unique Ligands	NAG

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2O72 \| pdb_00002o72	Download File View File

Crystal Structure Analysis of human E-cadherin (1-213)

Parisini, E., Wang, J.-H.

(2007) J Mol Biology 373: 401-411

Released	2007-10-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Epithelial-cadherin (protein)
Unique Ligands	CA

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4OY9 \| pdb_00004oy9	Download File View File

Crystal structure of human P-Cadherin EC1-EC2 in closed conformation

Dalle Vedove, A., Lucarelli, A.P., Nardone, V., Matino, A., Parisini, E.

(2015) Acta Crystallogr F Struct Biol Commun 71: 371-380

Released	2015-04-01
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Homo sapiens
Macromolecule	Cadherin-3 (protein)
Unique Ligands	CA

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4WCT \| pdb_00004wct	Download File View File

The crystal structure of Fructosyl amine: oxygen oxidoreductase (Amadoriase I) from Aspergillus fumigatus

Rigoldi, F., Gautieri, A., Dalle Vedove, A., Lucarelli, A.P., Vesentini, S., Parisini, E.

(2016) Proteins 84: 744-758

Released	2016-02-17
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Aspergillus fumigatus
Macromolecule	Fructosyl amine:oxygen oxidoreductase (protein)
Unique Ligands	FAD

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4XWZ \| pdb_00004xwz	Download File View File

The crystal structure of Fructosyl amine: oxygen oxidoreductase (Amadoriase I) from Aspergillus fumigatus in complex with the substrate fructosyl lysine

Rigoldi, F., Gautieri, A., Dalle Vedove, A., Lucarelli, A.P., Vesentini, S., Parisini, E.

(2016) Proteins 84: 744-758

Released	2016-02-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aspergillus fumigatus
Macromolecule	Fructosyl amine:oxygen oxidoreductase (protein)
Unique Ligands	BDF, FAD, LYS

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4ZT1 \| pdb_00004zt1	Download File View File

Crystal structure of human E-Cadherin (residues 3-213) in x-dimer conformation

Nardone, V., Lucarelli, A.P., Dalle Vedove, A., Parisini, E.

(2016) J Med Chem 59: 5089-5094

Released	2016-06-01
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	Cadherin-1 (protein)
Unique Ligands	CA

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4ZTE \| pdb_00004zte	Download File View File

Crystal structure of human E-Cadherin (residues 3-213) in complex with a peptidomimetic inhibitor

Nardone, V., Lucarelli, A.P., Dalle Vedove, A., Parisini, E.

(2016) J Med Chem 59: 5089-5094

Released	2016-06-01
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Homo sapiens
Macromolecule	Cadherin-1 (protein)
Unique Ligands	4RL, CA

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5OC2 \| pdb_00005oc2	Download File View File

Crystal structure of Asp295Cys/Lys303Cys Amadoriase I mutant from Aspergillus Fumigatus

Rigoldi, F., Donini, S., Gautieri, A., Parisini, E.

(2018) Sci Rep 8: 3042-3042

Released	2018-02-28
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Aspergillus fumigatus
Macromolecule	Fructosyl amine:oxygen oxidoreductase (protein)
Unique Ligands	FAD

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5OC3 \| pdb_00005oc3	Download File View File

Crystal structure of Ser67Cys/Pro121Cys Amadoriase I mutant from Aspergillus Fumigatus

Rigoldi, F., Donini, S., Gautieri, A., Parisini, E.

(2018) Sci Rep 8: 3042-3042

Released	2018-02-28
Method	X-RAY DIFFRACTION 2.153 Å
Organisms	Aspergillus fumigatus
Macromolecule	Fructosyl amine:oxygen oxidoreductase (protein)
Unique Ligands	FAD, GOL

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6F6U \| pdb_00006f6u	Download File View File

Crystal structure of the PDE4D catalytic domain in complex with GEBR-7b

Prosdocimi, T., Donini, S., Parisini, E.

(2018) Biochemistry 57: 2876-2888

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.828 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	CV8, GOL, MG, ZN

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6F8R \| pdb_00006f8r	Download File View File

Crystal structure of the PDE4D catalytic domain in complex with GEBR-54

Prosdocimi, T., Donini, S., Parisini, E.

(2018) Biochemistry 57: 2876-2888

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.826 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	CZK, EDO, MG, ZN

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6F8T \| pdb_00006f8t	Download File View File

Crystal structure of the PDE4D catalytic domain in complex with GEBR-4a

Prosdocimi, T., Donini, S., Parisini, E.

(2018) Biochemistry 57: 2876-2888

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	CZT, MG, ZN

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6F8U \| pdb_00006f8u	Download File View File

Crystal structure of the PDE4D catalytic domain in complex with GEBR-20b

Prosdocimi, T., Donini, S., Parisini, E.

(2018) Biochemistry 57: 2876-2888

Released	2018-05-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	CZQ, MG, ZN

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6F8V \| pdb_00006f8v	Download File View File

Crystal structure of the PDE4D catalytic domain in complex with GEBR-18b

Prosdocimi, T., Donini, S., Parisini, E.

(2018) Biochemistry 57: 2876-2888

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	D0B, MG, ZN

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6F8W \| pdb_00006f8w	Download File View File

Crystal structure of the PDE4D catalytic domain in complex with GEBR-18a

Prosdocimi, T., Donini, S., Parisini, E.

(2018) Biochemistry 57: 2876-2888

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.601 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	D0E, MG, ZN

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6F8X \| pdb_00006f8x	Download File View File

Crystal structure of the PDE4D catalytic domain in complex with GEBR-26g

Prosdocimi, T., Donini, S., Parisini, E.

(2018) Biochemistry 57: 2876-2888

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	D08, DMS, EDO, MG, ZN

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6FDC \| pdb_00006fdc	Download File View File

Crystal structure of the PDE4D catalytic domain in complex with GEBR-32a

Prosdocimi, T., Donini, S., Parisini, E.

(2018) Biochemistry 57: 2876-2888

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	D5N, DD5, EDO, MG, ZN

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6QS9 \| pdb_00006qs9	Download File View File

Bovine Serum Albumin in complex with Ketoprofen

Donini, S., Parisini, E.

(2019) ACS Omega 4: 13270-13278

Released	2019-09-11
Method	X-RAY DIFFRACTION 2.802 Å
Organisms	Bos taurus
Macromolecule	Serum albumin (protein)
Unique Ligands	CA, JGE

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6TOR \| pdb_00006tor	Download File View File

human O-phosphoethanolamine phospho-lyase

Vettraino, C., Donini, S., Parisini, E.

(2020) Acta Crystallogr F Struct Biol Commun 76: 160-167

Released	2020-04-15
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Ethanolamine-phosphate phospho-lyase (protein)
Unique Ligands	GOL, PMP