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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ferraroni, M."

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Search Summary

This query matches 195 Structures.

Refinements

Structure Determination Methodology

experimental (195)

Scientific Name of Source Organism

	Homo sapiens (112)
	Rhodococcus opacus (18)
	Pseudaminobacter salicylatoxidans (10)
	Schistosoma mansoni (10)
	Streptococcus pneumoniae (6)
	Steccherinum ochraceum (5)
	Bos taurus (4)
	Sphingomonas sp. TTNP3 (4)
	Sus scrofa (4)
	Aspergillus niger (3)

More...

Taxonomy

	Eukaryota (141)
	Bacteria (46)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (195)

Polymer Entity Type

	Protein (180)
	DNA (15)

Refinement Resolution (Å)

	1.0 - 1.5 (76)
	1.5 - 2.0 (64)
	2.0 - 2.5 (40)
	2.5 - 3.0 (14)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (9)
	2005 - 2009 (7)
	2010 - 2014 (40)
	2015 - 2019 (42)
	2020 - 2024 (86)
	2025 - 2029 (7)

Enzyme Classification Name

	Lyases (121)
	Oxidoreductases (48)
	Hydrolases (4)
	Transferases (2)
	Isomerases (1)

Symmetry Type

	Asymmetric (130)
	Cyclic (38)
	Dihedral (16)

SCOP Classification

	All beta proteins (90)
	Alpha and beta proteins (a+b) (2)
	Alpha and beta proteins (a/b) (4)
	All alpha proteins (6)
	Artifacts (3)

AllSelected

1 to 25 of 195 Structures

Page 1 of 8

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1C82 \| pdb_00001c82	Download File View File

MECHANISM OF HYALURONAN BINDING AND DEGRADATION: STRUCTURE OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE IN COMPLEX WITH HYALURONIC ACID DISACCHARIDE AT 1.7 A RESOLUTION

Ponnuraj, K., Jedrzejas, M.J.

(2000) J Mol Biology 299: 885-895

Released	2001-04-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	CAC, NA
Unique branched monosaccharides	GCD, NAG

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1EGU \| pdb_00001egu	Download File View File

CRYSTAL STRUCTURE OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE AT 1.56 A RESOLUTION

Li, S., Kelly, S.J., Lamani, E., Ferraroni, M., Jedrzejas, M.J.

(2000) EMBO J 19: 1228-1240

Released	2001-02-16
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	SO4

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1J9W \| pdb_00001j9w	Download File View File

Solution Structure of the CAI Michigan 1 Variant

Briganti, F., Ferraroni, M., Chedwiggen, W.R., Scozzafava, A., Supuran, C.T., Tilli, S.

(2002) Biochemistry 41: 6237-6244

Released	2001-06-13
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	CARBONIC ANHYDRASE I (protein)
Unique Ligands	EDO, ZN

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1JV0 \| pdb_00001jv0	Download File View File

THE CRYSTAL STRUCTURE OF THE ZINC(II) ADDUCT OF THE CAI MICHIGAN 1 VARIANT

Briganti, F., Ferraroni, M., Chegwidden, W.R., Scozzafava, A., Supuran, C.T., Tilli, S.

(2002) Biochemistry 41: 6237-6244

Released	2001-09-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	CARBONIC ANHYDRASE I (protein)
Unique Ligands	CL, EDO, ZN

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1MFM \| pdb_00001mfm	Download File View File

MONOMERIC HUMAN SOD MUTANT F50E/G51E/E133Q AT ATOMIC RESOLUTION

Ferraroni, M., Rypniewski, W., Wilson, K.S., Orioli, P.L., Viezzoli, M.S., Banci, L., Bertini, I., Mangani, S.

(1999) J Mol Biology 288: 413-426

Released	1999-04-21
Method	X-RAY DIFFRACTION 1.02 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (COPPER,ZINC SUPEROXIDE DISMUTASE) (protein)
Unique Ligands	CD, CL, CU, ZN

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1OJM \| pdb_00001ojm	Download File View File

SPECIFICITY AND MECHANISM OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE: COMPLEX WITH UNSULPHATED CHONDROITIN DISACCHARIDE

Rigden, D.J., Jedrzejas, M.J.

(2003) J Biological Chem 278: 50596

Released	2003-10-30
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GCD, NGA

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1OJN \| pdb_00001ojn	Download File View File

SPECIFICITY AND MECHANISM OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE: COMPLEX OF THE TYR408PHE MUTANT WITH 6-SULPHATED CHONDROITIN DISACCHARIDE

Rigden, D.J., Jedrzejas, M.J.

(2003) J Biological Chem 278: 50596

Released	2003-10-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GCD, NG6

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1OJO \| pdb_00001ojo	Download File View File

SPECIFICITY AND MECHANISM OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE: COMPLEX OF THE TYR408PHE MUTANT WITH 4-SULPHATED CHONDROITIN DISACCHARIDE

Rigden, D.J., Jedrzejas, M.J.

(2003) J Biological Chem 278: 50596

Released	2003-10-30
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	ASG, GCD

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1OJP \| pdb_00001ojp	Download File View File

SPECIFICITY AND MECHANISM OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE: COMPLEX WITH 6-SULPHATED CHONDROITIN DISACCHARIDE

Rigden, D.J., Jedrzejas, M.J.

(2003) J Biological Chem 278: 50596

Released	2003-10-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GCD, NG6

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1S9A \| pdb_00001s9a	Download File View File

Crystal Structure of 4-Chlorocatechol 1,2-dioxygenase from Rhodococcus opacus 1CP

Ferraroni, M., Solyanikova, I.P., Kolomytseva, M.P., Scozzafava, A., Golovleva, L.A., Briganti, F.

(2004) J Biological Chem 279: 27646-27655

Released	2004-06-01
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Rhodococcus opacus
Macromolecule	Chlorocatechol 1,2-dioxygenase (protein)
Unique Ligands	BEZ, FE, HGP, TAM

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1SXN \| pdb_00001sxn	Download File View File

REDUCED BOVINE SUPEROXIDE DISMUTASE AT PH 5.0

Ferraroni, M., Rypniewski, W.R., Bruni, B., Orioli, P., Wilson, K.S., Mangani, S.

(1998) J Biol Inorg Chem 3: 411-422

Released	1998-03-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	CU, ZN SUPEROXIDE DISMUTASE (protein)
Unique Ligands	CA, CU, ZN

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1SXS \| pdb_00001sxs	Download File View File

Reduced bovine superoxide dismutase at pH 5.0 complexed with thiocyanate

Ferraroni, M., Rypniewski, W.R., Bruni, B., Orioli, P., Mangani, S.

(1998) J Biol Inorg Chem 3: 411-422

Released	1998-09-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (CU-ZN SUPEROXIDE DISMUTASE) (protein)
Unique Ligands	CA, CU, SCN, ZN

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1SXZ \| pdb_00001sxz	Download File View File

Reduced bovine superoxide dismutase at pH 5.0 complexed with azide

Ferraroni, M., Rypniewski, W.R., Bruni, B., Orioli, P., Wilson, K.S., Mangani, S.

(1998) J Biol Inorg Chem 3: 411-422

Released	1998-09-30
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (CU-ZN SUPEROXIDE DISMUTASE) (protein)
Unique Ligands	AZI, CA, CU, ZN

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1TMX \| pdb_00001tmx	Download File View File

Crystal structure of hydroxyquinol 1,2-dioxygenase from Nocardioides Simplex 3E

Ferraroni, M., Travkin, V.M., Seifert, J., Schlomann, M., Golovleva, L., Scozzafava, A., Briganti, F.

(2005) J Biological Chem 280: 21144-21154

Released	2005-03-22
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Pimelobacter simplex
Macromolecule	hydroxyquinol 1,2-dioxygenase (protein)
Unique Ligands	BEZ, CL, CU, FE, HGX, SO4

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2AEO \| pdb_00002aeo	Download File View File

Crystal structure of cisplatinated bovine Cu,Zn superoxide dismutase

Calderone, V., Casini, A., Mangani, S., Messori, L., Orioli, P.L.

(2006) Angew Chem Int Ed Engl 45: 1267-1269

Released	2006-05-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	Superoxide dismutase [Cu-Zn] (protein)
Unique Ligands	CPT, CU, ZN

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2BOY \| pdb_00002boy	Download File View File

Crystal structure of 3-ChloroCatechol 1,2-Dioxygenase from Rhodococcus Opacus 1CP

Ferraroni, M., Solyanikova, I.P., Kolomytseva, M.P., Scozzafava, A., Golovleva, L.A., Briganti, F.

(2006) J Mol Biology 360: 788-799

Released	2006-08-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rhodococcus opacus
Macromolecule	3-CHLOROCATECHOL 1,2-DIOXYGENASE (protein)
Unique Ligands	BHO, FE, LPP, MG

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2HRG \| pdb_00002hrg	Download File View File

Crystal Structure of Blue Laccase from Trametes trogii complexed with p-methylbenzoate

Matera, I., Gullotto, A., Ferraroni, M., Tilli, S., Briganti, F., Scozzafava, A.

(2008) Inorganica Chim Acta 361: 4129-4137

Released	2007-09-11
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Coriolopsis trogii
Macromolecule	Laccase (protein)
Unique Ligands	4MA, CA, CU, GOL
Unique branched monosaccharides	BMA, MAN, NAG

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2HRH \| pdb_00002hrh	Download File View File

Crystal Structure of Blue Laccase from Trametes trogii

Matera, I., Gullotto, A., Ferraroni, M., Tilli, S., Briganti, F., Scozzafava, A.

(2008) Inorganica Chim Acta 361: 4129-4137

Released	2007-09-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Coriolopsis trogii
Macromolecule	Laccase (protein)
Unique Ligands	CU
Unique branched monosaccharides	NAG

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2PHD \| pdb_00002phd	Download File View File

Crystal Structure Determination of a Salicylate 1,2-Dioxygenase from Pseudaminobacter salicylatoxidans

Matera, I., Ferraroni, M., Briganti, F.

To be published

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Pseudaminobacter salicylatoxidans
Macromolecule	Gentisate 1,2-dioxygenase (protein)
Unique Ligands	ACT, CL, FE

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2QT6 \| pdb_00002qt6	Download File View File

Crystal Structure Determination of a Blue Laccase from Lentinus Tigrinus

Ferraroni, M., Briganti, F., Scozzafava, A.

(2007) BMC Struct Biol 7: 60-60

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lentinus tigrinus
Macromolecule	Laccase (protein)
Unique Ligands	CA, CL, CU, GOL, MAN, NAG, PER, TLA
Unique branched monosaccharides	BMA, NAG

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3HGI \| pdb_00003hgi	Download File View File

Crystal structure of Catechol 1,2-Dioxygenase from the gram-positive Rhodococcus opacus 1CP

Ferraroni, M., Matera, I., Briganti, F., Scozzafava, A.

(2010) J Struct Biol 170: 548-564

Released	2010-01-12
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Rhodococcus opacus
Macromolecule	Catechol 1,2-dioxygenase (protein)
Unique Ligands	6PL, BEZ, CO3, FE

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3HHX \| pdb_00003hhx	Download File View File

Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with pyrogallol

Matera, I., Ferraroni, M., Briganti, F.

(2010) J Struct Biol 170: 548-564

Released	2010-01-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rhodococcus opacus
Macromolecule	Catechol 1,2-dioxygenase (protein)
Unique Ligands	6PL, FE, PYG

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3HHY \| pdb_00003hhy	Download File View File

Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with catechol

Matera, I., Ferraroni, M., Kolomytseva, M., Briganti, F., Scozzafava, A.

(2010) J Struct Biol 170: 548-564

Released	2010-01-12
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Rhodococcus opacus
Macromolecule	Catechol 1,2-dioxygenase (protein)
Unique Ligands	6PL, CAQ, CL, FE, MG