1IR2
Crystal Structure of Activated Ribulose-1,5-bisphosphate Carboxylase/oxygenase (Rubisco) from Green alga, Chlamydomonas reinhardtii Complexed with 2-Carboxyarabinitol-1,5-bisphosphate (2-CABP)
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
EA [auth Z] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
EA [auth Z] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
S [auth T] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
S [auth T] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
AA [auth X] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
AA [auth X] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
CA [auth Y] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
CA [auth Y] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
G [auth D] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
G [auth D] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
I [auth E] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
I [auth E] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
K [auth F] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
K [auth F] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
M [auth G] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
M [auth G] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
O [auth H] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
O [auth H] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
Q [auth S] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
Q [auth S] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
U | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
U | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
W [auth V] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
W [auth V] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
Y [auth W] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
Y [auth W] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
B [auth I] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
BA [auth 6] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
D [auth J] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
DA [auth 7] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
F [auth K] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
FA [auth 8] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
H [auth L] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
J [auth M] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
L [auth N] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
N [auth O] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
R [auth 1] | SCOP2 Family | RuBisCO, small subunit | 8069972 | 4001455 | SCOP2 (2022-06-29) |
R [auth 1] | SCOP2 Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2 (2022-06-29) |
T [auth 2] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
V [auth 3] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
X [auth 4] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
Z [auth 5] | SCOP2B Superfamily | RuBisCO, small subunit | 8069973 | 3001622 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
EA [auth Z] | RuBisCO_large_N | e1ir2Z1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
EA [auth Z] | RuBisCO_large | e1ir2Z2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
S [auth T] | RuBisCO_large_N | e1ir2T1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
S [auth T] | RuBisCO_large | e1ir2T2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
A | RuBisCO_large_N | e1ir2A1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
A | RuBisCO_large | e1ir2A2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
AA [auth X] | RuBisCO_large_N | e1ir2X1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
AA [auth X] | RuBisCO_large | e1ir2X2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
C [auth B] | RuBisCO_large_N | e1ir2B1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
C [auth B] | RuBisCO_large | e1ir2B2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
CA [auth Y] | RuBisCO_large_N | e1ir2Y1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
CA [auth Y] | RuBisCO_large | e1ir2Y2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
E [auth C] | RuBisCO_large_N | e1ir2C1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
E [auth C] | RuBisCO_large | e1ir2C2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
G [auth D] | RuBisCO_large_N | e1ir2D1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
G [auth D] | RuBisCO_large | e1ir2D2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
I [auth E] | RuBisCO_large_N | e1ir2E1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
I [auth E] | RuBisCO_large | e1ir2E2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
K [auth F] | RuBisCO_large_N | e1ir2F1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
K [auth F] | RuBisCO_large | e1ir2F2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
M [auth G] | RuBisCO_large_N | e1ir2G1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
M [auth G] | RuBisCO_large | e1ir2G2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
O [auth H] | RuBisCO_large_N | e1ir2H1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
O [auth H] | RuBisCO_large | e1ir2H2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
Q [auth S] | RuBisCO_large_N | e1ir2S1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
Q [auth S] | RuBisCO_large | e1ir2S2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
U | RuBisCO_large_N | e1ir2U1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
U | RuBisCO_large | e1ir2U2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
W [auth V] | RuBisCO_large_N | e1ir2V1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
W [auth V] | RuBisCO_large | e1ir2V2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
Y [auth W] | RuBisCO_large_N | e1ir2W1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
Y [auth W] | RuBisCO_large | e1ir2W2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
B [auth I] | RuBisCO_small | e1ir2I1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
BA [auth 6] | RuBisCO_small | e1ir261 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
D [auth J] | RuBisCO_small | e1ir2J1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
DA [auth 7] | RuBisCO_small | e1ir271 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
F [auth K] | RuBisCO_small | e1ir2K1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
FA [auth 8] | RuBisCO_small | e1ir281 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
H [auth L] | RuBisCO_small | e1ir2L1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
J [auth M] | RuBisCO_small | e1ir2M1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
L [auth N] | RuBisCO_small | e1ir2N1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
N [auth O] | RuBisCO_small | e1ir2O1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
P | RuBisCO_small | e1ir2P1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
R [auth 1] | RuBisCO_small | e1ir211 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
T [auth 2] | RuBisCO_small | e1ir221 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
V [auth 3] | RuBisCO_small | e1ir231 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
X [auth 4] | RuBisCO_small | e1ir241 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
Z [auth 5] | RuBisCO_small | e1ir251 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N) | Ribulose bisphosphate carboxylase large chain, N-terminal domain | The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. | Domain | |
PF00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large) | Ribulose bisphosphate carboxylase large chain, catalytic domain | The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. | Domain | |
PF00101 | Ribulose bisphosphate carboxylase, small chain (RuBisCO_small) | Ribulose bisphosphate carboxylase, small chain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Large subunit of Rubisco | ||||
Small subunit of Rubisco |
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
HYP | Parent Component: PRO :  AA0030 :  4-hydroxy-L-proline MOD:00039 | |
KCX | Parent Component: LYS :  AA0030 | |
SMC | Parent Component: CYS :  AA0030 , AA0234 :  4-hydroxy-L-proline MOD:00039 , S-methyl-L-cysteine MOD:00239 | |
MME | Parent Component: MET :  AA0030 , AA0234 , AA0064 :  4-hydroxy-L-proline MOD:00039 , S-methyl-L-cysteine MOD:00239 , N-methyl-L-methionine MOD:00073 |