RCSB PDB: Search

1DYL \| pdb_00001dyl	Download File View File

9 ANGSTROM RESOLUTION CRYO-EM RECONSTRUCTION STRUCTURE OF SEMLIKI FOREST VIRUS (SFV) AND FITTING OF THE CAPSID PROTEIN STRUCTURE IN THE EM DENSITY

Mancini, E.J., Clarke, M., Gowen, B.E., Rutten, T., Fuller, S.D.

(2000) Mol Cell 5: 255-266

Released	2000-08-18
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Semliki Forest virus
Macromolecule	NUCLEOCAPSID PROTEIN (protein)

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1GW7 \| pdb_00001gw7	Download File View File

QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY.

San Martin, C., Huiskonen, J., Bamford, J.K.H., Butcher, S.J., Fuller, S.D., Bamford, D.H., Burnett, R.M.

(2002) Nat Struct Biol 9: 756

Released	2002-03-13
Method	ELECTRON MICROSCOPY 13.5 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	MAJOR CAPSID PROTEIN (protein)

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1GW8 \| pdb_00001gw8	Download File View File

quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography.

San Martin, C., Huiskonen, J., Bamford, J.K.H., Butcher, S.J., Fuller, S.D., Bamford, D.H., Burnett, R.M.

(2002) Nat Struct Biol 9: 756

Released	2002-03-15
Method	ELECTRON MICROSCOPY 13.3 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	MAJOR CAPSID PROTEIN (protein)

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1HB5 \| pdb_00001hb5	Download File View File

quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography.

San Martin, C., Burnett, R.M., De Haas, F., Heinkel, R., Rutten, T., Fuller, S.D., Butcher, S.J., Bamford, D.H.

(2001) Structure 9: 917

Released	2001-12-05
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	BACTERIOPHAGE PRD1 P3-SHELL (protein)

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1HB7 \| pdb_00001hb7	Download File View File

quasi-atomic resolution model of bacteriophage PRD1 sus1 mutant, obtained by combined cryo-EM and X-ray crystallography.

San Martin, C., Burnett, R.M., De Haas, F., Heinkel, R., Rutten, T., Fuller, S.D., Butcher, S.J., Bamford, D.H.

(2001) Structure 9: 917

Released	2001-12-05
Method	ELECTRON MICROSCOPY 14 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	BACTERIOPHAGE PRD1 SUS1 MUTANT CAPSID (protein)

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1HB9 \| pdb_00001hb9	Download File View File

quasi-atomic resolution model of bacteriophage PRD1 wild type virion, obtained by combined cryo-EM and X-ray crystallography.

San Martin, C., Burnett, R.M., De Haas, F., Heinkel, R., Rutten, T., Fuller, S.D., Butcher, S.J., Bamford, D.H.

(2001) Structure 9: 917

Released	2001-12-05
Method	ELECTRON MICROSCOPY 25 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	BACTERIOPHAGE PRD1 (protein)

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1I9W \| pdb_00001i9w	Download File View File

CRYSTAL STRUCTURE OF THE FUSION GLYCOPROTEIN E1 FROM SEMLIKI FOREST VIRUS

Lescar, J., Roussel, A., Wien, M.W., Navaza, J., Fuller, S.D., Wengler, G., Wengler, G., Rey, F.A.

(2001) Cell 105: 137-148

Released	2002-04-06
Method	X-RAY DIFFRACTION 3 Å
Organisms	Semliki Forest virus
Macromolecule	FUSION PROTEIN E1 (protein)

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1N7U \| pdb_00001n7u	Download File View File

THE RECEPTOR-BINDING PROTEIN P2 OF BACTERIOPHAGE PRD1: CRYSTAL FORM I

Xu, L., Benson, S.D., Butcher, S.J., Bamford, D.H., Burnett, R.M.

(2003) Structure 11: 309-322

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	Adsorption protein P2 (protein)
Unique Ligands	ACT, CA

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1N7V \| pdb_00001n7v	Download File View File

THE RECEPTOR-BINDING PROTEIN P2 OF BACTERIOPHAGE PRD1: CRYSTAL FORM III

Xu, L., Benson, S.D., Butcher, S.J., Bamford, D.H., Burnett, R.M.

(2003) Structure 11: 309-322

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	Adsorption protein P2 (protein)
Unique Ligands	ACT, CA

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1P58 \| pdb_00001p58	Download File View File

Complex Organization of Dengue Virus Membrane Proteins as Revealed by 9.5 Angstrom Cryo-EM reconstruction

Zhang, W., Chipman, P.R., Corver, J., Johnson, P.R., Zhang, Y., Mukhopadhyay, S., Baker, T.S., Strauss, J.H., Rossmann, M.G., Kuhn, R.J.

(2003) Nat Struct Biol 10: 907-912

Released	2003-11-04
Method	ELECTRON MICROSCOPY 9.5 Å
Organisms	Dengue virus 2 Puerto Rico/PR159-S1/1969
Macromolecule	Envelope protein M (protein) Major envelope protein E (protein)

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1RER \| pdb_00001rer	Download File View File

Crystal structure of the homotrimer of fusion glycoprotein E1 from Semliki Forest Virus.

Gibbons, D.L., Vaney, M.C., Roussel, A., Vigouroux, A., Reilly, B., Kielian, M., Rey, F.A.

(2004) Nature 427: 320-325

Released	2004-01-27
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Semliki Forest virus
Macromolecule	Structural polyprotein (protein)
Unique Ligands	BR, HO, PO4
Unique branched monosaccharides	BMA, FUC, FUL, MAN, NAG

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1W8X \| pdb_00001w8x	Download File View File

Structural analysis of PRD1

Abrescia, N.G.A., Cockburn, J.J.B., Grimes, J.M., Sutton, G.C., Diprose, J.M., Butcher, S.J., Fuller, S.D., San Martin, C., Burnett, R.M., Stuart, D.I., Bamford, D.H., Bamford, J.K.H.

(2004) Nature 432: 68

Released	2004-11-11
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	MAJOR CAPSID PROTEIN (PROTEIN P3) (protein) PROTEIN P16 (protein) PROTEIN P30 (protein) PROTEIN P31 (protein)

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2PX2 \| pdb_00002px2	Download File View File

Crystal structure of the Murray Valley Encephalitis Virus NS5 2'-O Methyltransferase domain in complex with SAH (Monoclinic form 1)

Assenberg, R., Ren, J., Verma, A., Walter, T.S., Alderton, D., Hurrelbrink, R.J., Fuller, S.D., Owens, R.J., Stuart, D.I., Grimes, J.M., Oxford Protein Production Facility (OPPF)

(2007) J Gen Virol 88: 2228-2236

Released	2007-05-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Murray valley encephalitis virus (strain MVE-1-51)
Macromolecule	Genome polyprotein [Contains: Capsid protein C (Core protein); Envelope protein M (Matrix protein); Major envelope protein E; Non-structural protein 1 (NS1); Non-structural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Flavivirin protease NS3 catalytic subunit; Non-structural protein 4A (NS4A); Non-structural protein 4B (NS4B); RNA-directed RNA polymerase (EC 2.7.7.48) (NS5)] (protein)
Unique Ligands	CL, SAH

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2PX4 \| pdb_00002px4	Download File View File

Crystal structure of the Murray Valley Encephalitis Virus NS5 2'-O Methyltransferase domain in complex with SAH (Monoclinic form 2)

Assenberg, R., Ren, J., Verma, A., Walter, T.S., Alderton, D., Hurrelbrink, R.J., Fuller, S.D., Owens, R.J., Stuart, D.I., Grimes, J.M., Oxford Protein Production Facility (OPPF)

(2007) J Gen Virol 88: 2228-2236

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Murray valley encephalitis virus (strain MVE-1-51)
Macromolecule	Genome polyprotein [Contains: Capsid protein C (Core protein); Envelope protein M (Matrix protein); Major envelope protein E; Non-structural protein 1 (NS1); Non-structural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Flavivirin protease NS3 catalytic subunit; Non-structural protein 4A (NS4A); Non-structural protein 4B (NS4B); RNA-directed RNA polymerase (EC 2.7.7.48) (NS5)] (protein)
Unique Ligands	CL, GOL, SAH, SO4, UNX

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2PX5 \| pdb_00002px5	Download File View File

Crystal structure of the Murray Valley Encephalitis Virus NS5 2'-O Methyltransferase domain in complex with SAH (Orthorhombic crystal form)

Assenberg, R., Ren, J., Verma, A., Walter, T.S., Alderton, D., Hurrelbrink, R.J., Fuller, S.D., Owens, R.J., Stuart, D.I., Grimes, J.M., Oxford Protein Production Facility (OPPF)

(2007) J Gen Virol 88: 2228-2236

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Murray valley encephalitis virus (strain MVE-1-51)
Macromolecule	Genome polyprotein [Contains: Capsid protein C (Core protein); Envelope protein M (Matrix protein); Major envelope protein E; Non-structural protein 1 (NS1); Non-structural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Flavivirin protease NS3 catalytic subunit; Non-structural protein 4A (NS4A); Non-structural protein 4B (NS4B); RNA-directed RNA polymerase (EC 2.7.7.48) (NS5)] (protein)
Unique Ligands	SAH, SO4

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2PX8 \| pdb_00002px8	Download File View File

Crystal structure of the Murray Valley Encephalitis Virus NS5 2'-O Methyltransferase domain in complex with SAH and 7M-GTP

Assenberg, R., Ren, J., Verma, A., Walter, T.S., Alderton, D., Hurrelbrink, R.J., Fuller, S.D., Owens, R.J., Stuart, D.I., Grimes, J.M., Oxford Protein Production Facility (OPPF)

(2007) J Gen Virol 88: 2228-2236

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Murray valley encephalitis virus (strain MVE-1-51)
Macromolecule	Genome polyprotein [Contains: Capsid protein C (Core protein); Envelope protein M (Matrix protein); Major envelope protein E; Non-structural protein 1 (NS1); Non-structural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Flavivirin protease NS3 catalytic subunit; Non-structural protein 4A (NS4A); Non-structural protein 4B (NS4B); RNA-directed RNA polymerase (EC 2.7.7.48) (NS5)] (protein)
Unique Ligands	3PO, CL, GOL, MGT, SAH

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2PXA \| pdb_00002pxa	Download File View File

Crystal structure of the Murray Valley Encephalitis Virus NS5 2'-O Methyltransferase domain in complex with SAH and GTPG

Assenberg, R., Ren, J., Verma, A., Walter, T.S., Alderton, D., Hurrelbrink, R.J., Fuller, S.D., Owens, R.J., Stuart, D.I., Grimes, J.M., Oxford Protein Production Facility (OPPF)

(2007) J Gen Virol 88: 2228-2236

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Murray valley encephalitis virus (strain MVE-1-51)
Macromolecule	Genome polyprotein [Contains: Capsid protein C (Core protein); Envelope protein M (Matrix protein); Major envelope protein E; Non-structural protein 1 (NS1); Non-structural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Flavivirin protease NS3 catalytic subunit; Non-structural protein 4A (NS4A); Non-structural protein 4B (NS4B); RNA-directed RNA polymerase (EC 2.7.7.48) (NS5)] (protein)
Unique Ligands	GTP, SAH

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2PXC \| pdb_00002pxc	Download File View File

Crystal structure of the Murray Valley Encephalitis Virus NS5 2'-O Methyltransferase domain in complex with SAM and GTPA

Assenberg, R., Ren, J., Verma, A., Walter, T.S., Alderton, D., Hurrelbrink, R.J., Fuller, S.D., Owens, R.J., Stuart, D.I., Grimes, J.M., Oxford Protein Production Facility (OPPF)

(2007) J Gen Virol 88: 2228-2236

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Murray valley encephalitis virus (strain MVE-1-51)
Macromolecule	Genome polyprotein [Contains: Capsid protein C (Core protein); Envelope protein M (Matrix protein); Major envelope protein E; Non-structural protein 1 (NS1); Non-structural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Flavivirin protease NS3 catalytic subunit; Non-structural protein 4A (NS4A); Non-structural protein 4B (NS4B); RNA-directed RNA polymerase (EC 2.7.7.48) (NS5)] (protein)
Unique Ligands	G3A, SAM

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2XFC \| pdb_00002xfc	Download File View File

CHIKUNGUNYA E1 E2 ENVELOPE GLYCOPROTEINS FITTED IN SEMLIKI FOREST VIRUS cryo-EM MAP

Voss, J.E., Vaney, M.C., Duquerroy, S., Rey, F.A.

(2010) Nature 468: 709

Released	2010-11-24
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Chikungunya virus
Macromolecule	E1 ENVELOPE GLYCOPROTEIN (protein) E2 ENVELOPE GLYCOPROTEIN (protein)

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3N40 \| pdb_00003n40	Download File View File

Crystal structure of the immature envelope glycoprotein complex of Chikungunya virus.

Voss, J., Vaney, M.C., Duquerroy, S., Rey, F.A.

(2010) Nature 468: 709-712

Released	2010-12-01
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Chikungunya virus
Macromolecule	E1 envelope glycoprotein (protein) P62 envelope glycoprotein (protein)
Unique Ligands	ACT, NAG
Unique branched monosaccharides	NAG, NDG

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3N41 \| pdb_00003n41	Download File View File

Crystal structure of the mature envelope glycoprotein complex (spontaneous cleavage) of Chikungunya virus.

Voss, J., Vaney, M.C., Duquerroy, S., Rey, F.A.

(2010) Nature 468: 709-712

Released	2010-12-01
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Chikungunya virus
Macromolecule	E1 envelope glycoprotein (protein) E2 envelope glycoprotein (protein) E3 envelope glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG, NDG

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3N42 \| pdb_00003n42	Download File View File

Crystal structures of the mature envelope glycoprotein complex (furin cleavage) of Chikungunya virus.

Voss, J., Vaney, M.C., Duquerroy, S., Rey, F.A.

(2010) Nature 468: 709-712

Released	2010-12-01
Method	X-RAY DIFFRACTION 3 Å
Organisms	Chikungunya virus
Macromolecule	E1 envelope glycoprotein (protein) E2 envelope glycoprotein (protein) E3 envelope glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG, NDG

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3N43 \| pdb_00003n43	Download File View File

Crystal structures of the mature envelope glycoprotein complex (trypsin cleavage) of Chikungunya virus.

Voss, J., Vaney, M.C., Duquerroy, S., Rey, F.A.

(2010) Nature 468: 709-712

Released	2010-12-01
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Chikungunya virus
Macromolecule	E1 envelope glycoprotein (protein) E2 envelope glycoprotein (protein) E3 envelope glycoprotein (protein)
Unique Ligands	ACT, NAG
Unique branched monosaccharides	NAG, NDG

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3N44 \| pdb_00003n44	Download File View File

Crystal structure of the mature envelope glycoprotein complex (trypsin cleavage; Osmium soak) of Chikungunya virus.

Voss, J., Vaney, M.C., Duquerroy, S., Rey, F.A.

(2010) Nature 468: 709-712

Released	2010-12-01
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Chikungunya virus
Macromolecule	E1 envelope glycoprotein (protein) E2 envelope glycoprotein (protein) E3 envelope glycoprotein (protein)
Unique Ligands	ACT, NAG, OS

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4ADG \| pdb_00004adg	Download File View File

Crystal structure of the Rubella virus envelope Glycoprotein E1 in post-fusion form (crystal form II)

DuBois, R.M., Vaney, M.C., Tortorici, M.A., Al Kurdi, R., Barba-Spaeth, G., Rey, F.A.

(2013) Nature 493: 552

Released	2013-01-09
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Rubella virus
Macromolecule	E1 ENVELOPE GLYCOPROTEIN (protein)
Unique Ligands	ACT, CA, CL, GOL, NAG, NGA, PEG

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DYL | pdb_00001dyl

1GW7 | pdb_00001gw7

1GW8 | pdb_00001gw8

1HB5 | pdb_00001hb5

1HB7 | pdb_00001hb7

1HB9 | pdb_00001hb9

1I9W | pdb_00001i9w

1N7U | pdb_00001n7u

1N7V | pdb_00001n7v

1P58 | pdb_00001p58

1RER | pdb_00001rer

1W8X | pdb_00001w8x

2PX2 | pdb_00002px2

2PX4 | pdb_00002px4

2PX5 | pdb_00002px5

2PX8 | pdb_00002px8

2PXA | pdb_00002pxa

2PXC | pdb_00002pxc

2XFC | pdb_00002xfc

3N40 | pdb_00003n40

3N41 | pdb_00003n41

3N42 | pdb_00003n42

3N43 | pdb_00003n43

3N44 | pdb_00003n44

4ADG | pdb_00004adg