3K1K
Green fluorescent protein bound to enhancer nanobody
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3k1ka_ | Alpha and beta proteins (a+b) | GFP-like | GFP-like | Fluorescent proteins | Green fluorescent protein, GFP | (Aequorea victoria ) [TaxId: 6100 ], | SCOPe (2.08) |
B | d3k1kb_ | Alpha and beta proteins (a+b) | GFP-like | GFP-like | Fluorescent proteins | Green fluorescent protein, GFP | (Aequorea victoria ) [TaxId: 6100 ], | SCOPe (2.08) |
C | d3k1kc1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Camelus dromedarius ) [TaxId: 9838 ], | SCOPe (2.08) |
C | d3k1kc2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Camelus dromedarius ) [TaxId: 9838 ], | SCOPe (2.08) |
D | d3k1kd1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Camelus dromedarius ) [TaxId: 9838 ], | SCOPe (2.08) |
D | d3k1kd2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Camelus dromedarius ) [TaxId: 9838 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GFP | e3k1kA1 | A: beta barrels | X: GFP-like (From Topology) | H: GFP-like (From Topology) | T: GFP-like | F: GFP | ECOD (1.6) |
B | GFP | e3k1kB1 | A: beta barrels | X: GFP-like (From Topology) | H: GFP-like (From Topology) | T: GFP-like | F: GFP | ECOD (1.6) |
C | V-set_10 | e3k1kC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_10 | ECOD (1.6) |
D | V-set_8 | e3k1kD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.155.10 | Mainly Beta | Beta Barrel | Green Fluorescent Protein | Green fluorescent protein | CATH (4.3.0) |
B | 2.40.155.10 | Mainly Beta | Beta Barrel | Green Fluorescent Protein | Green fluorescent protein | CATH (4.3.0) |
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
VH domain | VH | Lama glama (llama) | IGHV3S1*01, IGHJ4*01, IGHJ1-4*01, IGHJ2-4*01 | V-DOMAIN VH | IG | (VH) | IMGT (202449-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | green fluorescent protein | SAbDab (2024-12-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01353 | Green fluorescent protein (GFP) | Green fluorescent protein | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Green Fluorescent Protein | - | - | ||
Enhancer | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000786 | Green fluorescent protein, GFP | Family | |
IPR011584 | Green fluorescent protein-related | Family | |
IPR009017 | Green fluorescent protein | Homologous Superfamily |