9IIA

Crystal structure of the free histidine prenyltransferase FunA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.213 
  • R-Value Observed: 0.215 

Starting Model: experimental
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Literature

Discovery, Characterization and Engineering of the Free l-Histidine C4 -Prenyltransferase.

Chen, X.W.Liu, Z.Dai, S.Zou, Y.

(2024) J Am Chem Soc 146: 23686-23691

  • DOI: https://doi.org/10.1021/jacs.4c08388
  • Primary Citation of Related Structures:  
    9IIA

  • PubMed Abstract: 

    Prenylation of amino acids is a critical step for synthesizing building blocks of prenylated alkaloid family natural products, where the corresponding prenyltransferase that catalyzes prenylation on free l-histidine (l-His) has not yet been identified. Here, we first discovered and characterized a prenyltransferase FunA from the antifungal agent fungerin pathway that efficiently performs C4 -dimethylallylation on l-His. Crystal structure-guided engineering of the prenyl-binding pocket of FunA, a single M181A mutation, successfully converted it into a C4 -geranyltransferase. Furthermore, FunA and its variant FunA-M181A show broad substrate promiscuity toward substrates that vary in substituents of the imidazole ring. Our work furthers our knowledge of free amino acid prenyltransferase and expands the arsenal of alkylation biocatalysts for imidazole-containing small molecules.


  • Organizational Affiliation

    College of Pharmaceutical Sciences, Southwest University, Chongqing 400715, P. R. China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Dimethylallyl tryptophan synthase GliD1
A, B
441Fusarium tricinctumMutation(s): 0 
Gene Names: BKA59DRAFT_455755
UniProt
Find proteins for A0A8K0WD55 (Fusarium tricinctum)
Explore A0A8K0WD55 
Go to UniProtKB:  A0A8K0WD55
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8K0WD55
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.213 
  • R-Value Observed: 0.215 
  • Space Group: P 63 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 202.21α = 90
b = 202.21β = 90
c = 111.04γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data scaling
xia2data reduction
PHENIXphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, China)China22177093

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-11
    Type: Initial release