Download MendeleySelective oxidation of active site aromatic residues in engineered Cu proteins
Uyeda, K.S., Follmer, A.H., Borovik, A.S.(2024) Chem Sci
9E6Z
Streptavidin-E101Q-S112F-K121A bound to Cu(II)-biotin-ethyl-dipicolylamine cofactor
- PDB DOI: https://doi.org/10.2210/pdb9E6Z/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Streptomyces avidinii
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2024-10-31 Released: 2024-12-11
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.219
- R-Value Work: 0.201
- R-Value Observed: 0.202
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Streptavidin | 159 | Streptomyces avidinii | Mutation(s): 3 |  | |
UniProt | |||||
Find proteins for P22629 (Streptomyces avidinii) Explore P22629 Go to UniProtKB: P22629 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P22629 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| QG7 Query on QG7 | B [auth A] | N-(2-{bis[(pyridin-2-yl)methyl]amino}ethyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide C24 H32 N6 O2 S GXLJCVSDSFWSLD-FUDKSRODSA-N |  | ||
| CU Query on CU | D [auth A] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N |  | ||
| ACY (Subject of Investigation/LOI) Query on ACY | C [auth A] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.219
- R-Value Work: 0.201
- R-Value Observed: 0.202
- Space Group: I 41 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.536 | α = 90 |
| b = 57.536 | β = 90 |
| c = 176.282 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-12-11 Deposition Author(s): Uyeda, K.S., Follmer, A.H., Borovik, A.S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM120349 |
Revision History (Full details and data files)
- Version 1.0: 2024-12-11
Type: Initial release
