Download MendeleyAspartyl/Asparaginyl beta-hydroxylase (AspH) R688Q variant in complex with Mn, (3R)-methyl-2-oxoglutarate and a Factor X derived peptide fragment
Brasnett, A., Hou, C., Rabe, P., Brewitz, L., Schofield, C.J.To be published.
8RE8
Aspartyl/Asparaginyl beta-hydroxylase (AspH) R688Q variant in complex with Mn, (3R)-methyl-2-oxoglutarate and a Factor X derived peptide fragment
- PDB DOI: https://doi.org/10.2210/pdb8RE8/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Homo sapiens, synthetic construct
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2023-12-10 Released: 2024-12-18
- Funding Organization(s): Wellcome Trust, Biotechnology and Biological Sciences Research Council (BBSRC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.208
- R-Value Work: 0.177
- R-Value Observed: 0.179
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Aspartyl/asparaginyl beta-hydroxylase | 444 | Homo sapiens | Mutation(s): 1 Gene Names: ASPH, BAH EC: 1.14.11.16 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q12797 (Homo sapiens) Explore Q12797 Go to UniProtKB: Q12797 | |||||
PHAROS: Q12797 GTEx: ENSG00000198363 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q12797 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Coagulation factor X | 39 | synthetic construct | Mutation(s): 4 EC: 3.4.21.6 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P00742 (Homo sapiens) Explore P00742 Go to UniProtKB: P00742 | |||||
PHAROS: P00742 GTEx: ENSG00000126218 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00742 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| Q1Z (Subject of Investigation/LOI) Query on Q1Z | C [auth A] | (3~{R})-3-methyl-2-oxidanylidene-pentanedioic acid C6 H8 O5 BJQIUPTURRAODO-GSVOUGTGSA-N |  | ||
| PEG Query on PEG | D [auth A], E [auth A], F [auth A], G [auth A], H [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| MN (Subject of Investigation/LOI) Query on MN | I [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
| CL Query on CL | J [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.208
- R-Value Work: 0.177
- R-Value Observed: 0.179
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 50.604 | α = 90 |
| b = 85.998 | β = 90 |
| c = 123.963 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| xia2 | data scaling |
| xia2 | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-12-18 Deposition Author(s): Brasnett, A., Hou, C., Rabe, P., Brewitz, L., Schofield, C.J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Wellcome Trust | United Kingdom | 106244/Z/14/Z |
| Biotechnology and Biological Sciences Research Council (BBSRC) | United Kingdom | BB/V001892/1 |
| Wellcome Trust | United Kingdom | 227298/Z/23/Z |
Revision History (Full details and data files)
- Version 1.0: 2024-12-18
Type: Initial release
