Download MendeleyThaumatin Structure at pH 6.0
Masuda, T., Sano, A., Murata, K., Okubo, K., Suzuki, M., Mikami, B.To be published.
5SW1
Thaumatin Structure at pH 6.0
- PDB DOI: https://doi.org/10.2210/pdb5SW1/pdb
- Classification: PLANT PROTEIN
- Organism(s): Thaumatococcus daniellii
- Expression System: Komagataella pastoris
- Mutation(s): No
- Deposited: 2016-08-08 Released: 2017-08-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.10 Å
- R-Value Free: 0.145
- R-Value Work: 0.131
- R-Value Observed: 0.131
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thaumatin I | 207 | Thaumatococcus daniellii | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P02883 (Thaumatococcus daniellii) Explore P02883 Go to UniProtKB: P02883 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P02883 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MHA Query on MHA | B [auth A] | (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID C6 H10 N2 O5 QZTKDVCDBIDYMD-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.10 Å
- R-Value Free: 0.145
- R-Value Work: 0.131
- R-Value Observed: 0.131
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.368 | α = 90 |
| b = 52.527 | β = 90 |
| c = 71.026 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data scaling |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Released Date: 2017-08-09 Deposition Author(s): Masuda, T., Sano, A., Murata, K., Okubo, K., Suzuki, M., Mikami, B.
Revision History (Full details and data files)
- Version 1.0: 2017-08-09
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description - Version 1.2: 2024-11-20
Changes: Structure summary
