Download MendeleyCrystal Structure of C-Myb DNA-Binding Domain: Specific Na+ Binding and Correlation with NMR Structure
Tahirov, T.H., Morii, H., Uedaira, H., Sasaki, M., Sarai, A., Adachi, S., Park, S.Y., Kamiya, N., Ogata, K.To be published.
1GVD | pdb_00001gvd
CRYSTAL STRUCTURE OF C-MYB R2 V103L MUTANT
- PDB DOI: https://doi.org/10.2210/pdb1GVD/pdb
- Classification: TRANSCRIPTION
- Organism(s): Mus musculus
- Mutation(s): Yes
- Deposited: 2002-02-08 Released: 2003-07-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.195 (Depositor)
- R-Value Work: 0.180 (Depositor)
- R-Value Observed: 0.180 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| MYB PROTO-ONCOGENE PROTEIN | 52 | Mus musculus | Mutation(s): 2 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P06876 (Mus musculus) Explore P06876 Go to UniProtKB: P06876 | |||||
IMPC: MGI:97249 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P06876 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| NH4 Query on NH4 | B [auth A] | AMMONIUM ION H4 N QGZKDVFQNNGYKY-UHFFFAOYSA-O |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.195 (Depositor)
- R-Value Work: 0.180 (Depositor)
- R-Value Observed: 0.180 (Depositor)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 28.951 | α = 90 |
| b = 40.114 | β = 90 |
| c = 48.807 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| X-PLOR | phasing |
Entry History
Deposition Data
- Released Date: 2003-07-03 Deposition Author(s): Tahirov, T.H., Ogata, K.
Revision History (Full details and data files)
- Version 1.0: 2003-07-03
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2019-05-08
Changes: Data collection, Experimental preparation, Other - Version 1.4: 2023-12-13
Changes: Data collection, Database references, Other, Refinement description
