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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Space Group = "P 1 21 1"

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Search Summary

This query matches 40 Structures.

Refinements

Structure Determination Methodology

experimental (40)

Scientific Name of Source Organism

	Rattus norvegicus (27)
	Homo sapiens (13)
	Xenopus laevis (2)
	Lama glama (1)

Taxonomy

Eukaryota (40)

Experimental Method

	ELECTRON MICROSCOPY (20)
	X-RAY DIFFRACTION (20)

Polymer Entity Type

Protein (40)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (9)
	2.0 - 2.5 (7)
	2.5 - 3.0 (3)
	3.0 - 3.5 (3)
	3.5 - 4.0 (13)
	4.0 - 4.5 (3)
	> 4.5 (1)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (5)
	2010 - 2014 (8)
	2015 - 2019 (3)
	2020 - 2024 (14)
	2025 - 2029 (6)

Enzyme Classification Name

	Lyases (1)
	Transferases (1)

Membrane Protein Annotation

	PDBTM (14)
	mpstruc (9)
	OPM (4)
	MemProtMD (2)

Symmetry Type

	Asymmetric (24)
	Cyclic (17)

SCOP Classification

	Alpha and beta proteins (a/b) (18)
	Artifacts (1)

AllSelected

1 to 25 of 40 Structures

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1MQG \| pdb_00001mqg	Download File View File

Crystal Structure of the GluR2 Ligand Binding Core (S1S2J) in Complex with Iodo-Willardiine at 2.15 Angstroms Resolution

Jin, R., Banke, T.G., Mayer, M.L., Traynelis, S.F., Gouaux, E.

(2003) Nat Neurosci 6: 803-810

Released	2003-08-05
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Rattus norvegicus
Macromolecule	glutamate receptor 2 (protein)
Unique Ligands	GOL, IWD, SO4

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1MQH \| pdb_00001mqh	Download File View File

Crystal Structure of the GluR2 Ligand Binding Core (S1S2J) in Complex with Bromo-Willardiine at 1.8 Angstroms Resolution

Jin, R., Banke, T.G., Mayer, M.L., Traynelis, S.F., Gouaux, E.

(2003) Nat Neurosci 6: 803-810

Released	2003-08-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rattus norvegicus
Macromolecule	glutamate receptor 2 (protein)
Unique Ligands	BWD

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1MQI \| pdb_00001mqi	Download File View File

Crystal Structure of the GluR2 Ligand Binding Core (S1S2J) in Complex with Fluoro-Willardiine at 1.35 Angstroms Resolution

Jin, R., Banke, T.G., Mayer, M.L., Traynelis, S.F., Gouaux, E.

(2003) Nat Neurosci 6: 803-810

Released	2003-08-05
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Rattus norvegicus
Macromolecule	glutamate receptor 2 (protein)
Unique Ligands	FWD

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1MQJ \| pdb_00001mqj	Download File View File

Crystal structure of the GluR2 ligand binding core (S1S2J) in complex with willardiine at 1.65 angstroms resolution

Jin, R., Banke, T.G., Mayer, M.L., Traynelis, S.F., Gouaux, E.

(2003) Nat Neurosci 6: 803-810

Released	2003-08-05
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Rattus norvegicus
Macromolecule	glutamate receptor 2 (protein)
Unique Ligands	HWD, ZN

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2AIX \| pdb_00002aix	Download File View File

X-ray structure of the GLUR2 ligand-binding core (S1S2J) in complex with (s)-thio-atpa at 2.2 a resolution.

Kastrup, J.S.

To be published

Released	2005-08-09
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein)
Unique Ligands	U1K

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2AL5 \| pdb_00002al5	Download File View File

Crystal structure of the GluR2 ligand binding core (S1S2J) in complex with fluoro-willardiine and aniracetam

Jin, R., Clark, S., Weeks, A.M., Dudman, J.T., Gouaux, E., Partin, K.M.

(2005) J Neurosci 25: 9027-9036

Released	2005-10-25
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein)
Unique Ligands	4MP, FWD

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2ANJ \| pdb_00002anj	Download File View File

Crystal Structure of the Glur2 Ligand Binding Core (S1S2J-Y450W) Mutant in Complex With the Partial Agonist Kainic Acid at 2.1 A Resolution

Holm, M.M., Naur, P., Vestergaard, B., Geballe, M.T., Gajhede, M., Kastrup, J.S., Traynelis, S.F., Egebjerg, J.

(2005) J Biological Chem 280: 35469-35476

Released	2005-08-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein)
Unique Ligands	KAI

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2V3T \| pdb_00002v3t	Download File View File

Structure of the ligand-binding core of the ionotropic glutamate receptor-like GluRdelta2 in the apo form

Naur, P., Vestergaard, B., Gajhede, M., Kastrup, J.S.

(2007) Proc Natl Acad Sci U S A 104: 14116

Released	2007-08-07
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Rattus norvegicus
Macromolecule	GLUTAMATE RECEPTOR DELTA-2 SUBUNIT SYNONYM GLURDELTA2, GLUR DELTA-2 (protein)
Unique Ligands	CA

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2V3U \| pdb_00002v3u	Download File View File

Structure of the ligand-binding core of the ionotropic glutamate receptor-like GluRdelta2 in complex with D-serine

Naur, P., Vestergaard, B., Gajhede, M., Kastrup, J.S.

(2007) Proc Natl Acad Sci U S A 104: 14116

Released	2007-08-07
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Rattus norvegicus
Macromolecule	GLUTAMATE RECEPTOR DELTA-2 SUBUNIT (protein)
Unique Ligands	CL, DSN, NA, SCN

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3OEK \| pdb_00003oek	Download File View File

Crystal structure of GluN2D ligand-binding core in complex with L-aspartate

Simorowski, N., Furukawa, H.

(2011) Nat Commun 2: 294-294

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate [NMDA] receptor subunit epsilon-4 (protein)
Unique Ligands	ASP

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3OEL \| pdb_00003oel	Download File View File

Crystal structure of GluN2D ligand-binding core in complex with D-glutamate

Simorowski, N., Furukawa, H.

(2011) Nat Commun 2: 294-294

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate [NMDA] receptor subunit epsilon-4 (protein)
Unique Ligands	DGL

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3OEM \| pdb_00003oem	Download File View File

Crystal structure of GluN2D ligand-binding core in complex with N-methyl-D-aspartate

Simorowski, N., Furukawa, H.

(2011) Nat Commun 2: 294-294

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate [NMDA] receptor subunit epsilon-4 (protein)
Unique Ligands	OEM

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3OEN \| pdb_00003oen	Download File View File

Crystal structure of GluN2D ligand-binding core in complex with L-glutamate

Simorowski, N., Furukawa, H.

(2011) Nat Commun 2: 294-294

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate [NMDA] receptor subunit epsilon-4 (protein)
Unique Ligands	GLU

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4JWX \| pdb_00004jwx	Download File View File

GluN2A ligand-binding core in complex with propyl-NHP5G

Hansen, K.B., Tajima, N., Risgaard, R., Perszyk, R.E., Jorgensen, L., Vance, K.M., Ogden, K.K., Clausen, R.P., Furukawa, H., Traynelis, S.F.

(2013) Mol Pharmacol 84: 114-127

Released	2013-05-29
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Rattus norvegicus
Macromolecule	GluN2A (protein)
Unique Ligands	1N4

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4JWY \| pdb_00004jwy	Download File View File

GluN2D ligand-binding core in complex with propyl-NHP5G

Hansen, K.B., Tajima, N., Risgaard, R., Perszyk, R.E., Jorgensen, L., Vance, K.M., Ogden, K.K., Clausen, R.P., Furukawa, H., Traynelis, S.F.

(2013) Mol Pharmacol 84: 114-127

Released	2013-05-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor ionotropic, NMDA 2D (protein)
Unique Ligands	1N4

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4KFQ \| pdb_00004kfq	Download File View File

Crystal structure of the NMDA receptor GluN1 ligand binding domain in complex with 1-thioxo-1,2-dihydro-[1,2,4]triazolo[4,3-a]quinoxalin-4(5H)-one

Steffensen, T.B., Tabrizi, F.M., Gajhede, M., Kastrup, J.S.

(2013) J Biological Chem 288: 33124-33135

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein)
Unique Ligands	GOL, KFQ, SO4

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4OX2 \| pdb_00004ox2	Download File View File

I45T cytosolic phosphoenolpyruvate carboxykinase in complex with beta-sulfopyruvate and GTP

Holyoak, T.

(2014) Mol Genet Metab 113: 161-170

Released	2014-06-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus
Macromolecule	Phosphoenolpyruvate carboxykinase, cytosolic [GTP] (protein)
Unique Ligands	1PE, ETX, GTP, MN, NA, SPV

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5CC2 \| pdb_00005cc2	Download File View File

STRUCTURE OF THE LIGAND-BINDING DOMAIN OF THE IONOTROPIC GLUTAMATE RECEPTOR-LIKE GLUD2 IN COMPLEX WITH 7-CKA

Naur, P., Gajhede, M., Kastrup, J.S.

(2016) Mol Pharmacol 89: 253-262

Released	2015-12-30
Method	X-RAY DIFFRACTION 2.501 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor ionotropic, delta-2 (protein)
Unique Ligands	CKA, CL, GOL

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6CNA \| pdb_00006cna	Download File View File

GluN1-GluN2B NMDA receptors with exon 5

Furukawa, H., Grant, T., Grigorieff, N.

(2018) Neuron 98: 521-529.e3

Released	2018-10-03
Method	ELECTRON MICROSCOPY 4.6 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2B (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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6E7R \| pdb_00006e7r	Download File View File

Heterodimer of the GluN1b-GluN2B NMDA receptor amino-terminal domains bound to allosteric inhibitor 93-4

Regan, M.C., Furukawa, H.

(2019) Nat Commun 10: 321

Released	2019-01-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rattus norvegicus Xenopus laevis
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2B (protein)
Unique Ligands	CL, HYS, NA, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8E92 \| pdb_00008e92	Download File View File

D-cycloserine and glutamate bound Human GluN1a-GluN2C NMDA receptor in intact conformation

Chou, T.-H., Furukawa, H.

(2022) Mol Cell 82: 4548

Released	2022-12-07
Method	ELECTRON MICROSCOPY 3.96 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2C (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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8E93 \| pdb_00008e93	Download File View File

D-cycloserine and glutamate bound Human GluN1a-GluN2C NMDA receptor in splayed conformation

Chou, T.-H., Furukawa, H.

(2022) Mol Cell 82: 4548

Released	2022-12-07
Method	ELECTRON MICROSCOPY 3.71 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2C (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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8E94 \| pdb_00008e94	Download File View File

PYD-106-bound Human GluN1a-GluN2C NMDA receptor in intact conformation

Chou, T.-H., Furukawa, H.

(2022) Mol Cell 82: 4548

Released	2022-12-07
Method	ELECTRON MICROSCOPY 3.72 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2C (protein)
Unique Ligands	IWB, NAG
Unique branched monosaccharides	BMA, NAG

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8E96 \| pdb_00008e96	Download File View File

Glycine and glutamate bound Human GluN1a-GluN2D NMDA receptor

Kang, H., Furukawa, H.

(2022) Mol Cell 82: 4548

Released	2022-12-07
Method	ELECTRON MICROSCOPY 3.38 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2D (protein)
Unique Ligands	GLU, GLY, NAG

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8E97 \| pdb_00008e97	Download File View File

PYD-106-bound Human GluN1a-GluN2C NMDA receptor in splayed conformation

Chou, T.-H., Furukawa, H.

(2022) Mol Cell 82: 4548

Released	2022-12-07
Method	ELECTRON MICROSCOPY 4.19 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2C (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

1 to 25 of 40 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1MQG | pdb_00001mqg

1MQH | pdb_00001mqh

1MQI | pdb_00001mqi

1MQJ | pdb_00001mqj

2AIX | pdb_00002aix

2AL5 | pdb_00002al5

2ANJ | pdb_00002anj

2V3T | pdb_00002v3t

2V3U | pdb_00002v3u

3OEK | pdb_00003oek

3OEL | pdb_00003oel

3OEM | pdb_00003oem

3OEN | pdb_00003oen

4JWX | pdb_00004jwx

4JWY | pdb_00004jwy

4KFQ | pdb_00004kfq

4OX2 | pdb_00004ox2

5CC2 | pdb_00005cc2

6CNA | pdb_00006cna

6E7R | pdb_00006e7r

8E92 | pdb_00008e92

8E93 | pdb_00008e93

8E94 | pdb_00008e94

8E96 | pdb_00008e96

8E97 | pdb_00008e97