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235,458 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "VRA0030"

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

Staphylococcus aureus (17)

Taxonomy

Bacteria (17)

Experimental Method

X-RAY DIFFRACTION (17)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	2.0 - 2.5 (14)
	2.5 - 3.0 (3)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (16)

Enzyme Classification Name

Transferases (17)

Symmetry Type

Asymmetric (17)

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1 to 17 of 17 Structures

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Explore in 3D

4ORK \| pdb_00004ork	Download File View File

Crystal Structure of the Phosphotransferase Domain of the Bifunctional Aminoglycoside Resistance Enzyme AAC(6')-Ie-APH(2'')-Ia

Smith, C.A., Toth, M., Bhattacharya, M., Frase, H., Vakulenko, S.B.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1561-1571

Released	2014-07-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	GDP, MG

Explore in 3D

5BYL \| pdb_00005byl	Download File View File

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) in complex with GMPPCP and Magnesium

Caldwell, S.J., Berghuis, A.M.

(2016) Structure 24: 935-945

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	CL, GCP, GOL, MG

Explore in 3D

5IQA \| pdb_00005iqa	Download File View File

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) in complex with GMPPNP and Magnesium

Caldwell, S.J., Berghuis, A.M.

(2016) Structure 24: 935-945

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	CL, GNP, MG

Explore in 3D

5IQB \| pdb_00005iqb	Download File View File

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) in complex with GMPPNP, Magnesium, and Kanamycin A

Caldwell, S.J., Berghuis, A.M.

(2016) Structure 24: 935-945

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	CL, GNP, KAN, MG

Explore in 3D

5IQC \| pdb_00005iqc	Download File View File

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) in complex with GMPPNP, Magnesium, and Gentamicin C1

Caldwell, S.J., Berghuis, A.M.

(2016) Structure 24: 935-945

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	51G, CL, GNP, GOL, MG

Explore in 3D

5IQD \| pdb_00005iqd	Download File View File

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) in complex with GMPPNP, Magnesium, and Ribostamycin

Caldwell, S.J., Berghuis, A.M.

(2016) Structure 24: 935-945

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	CL, GNP, MG, RIO

Explore in 3D

5IQE \| pdb_00005iqe	Download File View File

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) in complex with GMPPNP, Magnesium, and Neomycin B

Caldwell, S.J., Berghuis, A.M.

(2016) Structure 24: 935-945

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	GNP, GOL, MG, NMY

Explore in 3D

5IQF \| pdb_00005iqf	Download File View File

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of APH(6')-Ie/APH(2'')-Ia) in complex with GDP and Magnesium

Caldwell, S.J., Berghuis, A.M.

(2016) Structure 24: 935-945

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	CL, GDP, GOL, MG

Explore in 3D

5IQG \| pdb_00005iqg	Download File View File

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) in complex with GDP, Magnesium, and Gentamicin C1

Caldwell, S.J., Berghuis, A.M.

(2016) Structure 24: 935-945

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	51G, CL, GDP, MG

Explore in 3D

5IQH \| pdb_00005iqh	Download File View File

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) S214A mutant in complex with GMPPNP and Magnesium

Caldwell, S.J., Berghuis, A.M.

(2016) Structure 24: 935-945

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	CL, GNP, GOL, MG

Explore in 3D

5IQI \| pdb_00005iqi	Download File View File

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) Y237F mutant in complex with GMPPNP and Magnesium

Caldwell, S.J., Berghuis, A.M.

(2016) Structure 24: 935-945

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	CL, GNP, MG

Explore in 3D

6C5U \| pdb_00006c5u	Download File View File

Aminoglycoside Phosphotransferase (2'')-Ia in complex with GMPPNP, Magnesium, and Ribostamycin, Alternate form

Caldwell, S.J., Berghuis, A.M.

(2018) Antimicrob Agents Chemother 62:

Released	2018-04-11
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	CL, GNP, MG, RIO

Explore in 3D

6CAV \| pdb_00006cav	Download File View File

Aminoglycoside Phosphotransferase (2'')-Ia in complex with GMPPNP, Magnesium, and Dibekacin

Caldwell, S.J., Berghuis, A.M.

(2018) Antimicrob Agents Chemother 62:

Released	2018-04-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	84D, CL, GNP, MG

Explore in 3D

6CEY \| pdb_00006cey	Download File View File

Aminoglycoside Phosphotransferase (2'')-Ia in complex with GMPPNP, Magnesium, and Lividomycin moieties

Caldwell, S.J., Berghuis, A.M.

(2018) Antimicrob Agents Chemother 62:

Released	2018-04-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	CL, GNP, LIV, MG

Explore in 3D

6CGD \| pdb_00006cgd	Download File View File

Aminoglycoside Phosphotransferase (2'')-Ia in complex with GMPPNP, Magnesium, and Amikacin

Caldwell, S.J., Berghuis, A.M.

(2018) Antimicrob Agents Chemother 62:

Released	2018-04-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	AKN, CL, GNP, MG

Explore in 3D

6CGG \| pdb_00006cgg	Download File View File

Aminoglycoside Phosphotransferase (2'')-Ia in complex with GMPPNP, Magnesium, and Arbekacin

Caldwell, S.J., Berghuis, A.M.

(2018) Antimicrob Agents Chemother 62:

Released	2018-04-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	84G, CL, GNP, GOL, MG

Explore in 3D

6CH4 \| pdb_00006ch4	Download File View File

Aminoglycoside Phosphotransferase (2'')-Ia S376N mutant in complex with GMPPNP and Magnesium

Caldwell, S.J., Berghuis, A.M.

(2018) Antimicrob Agents Chemother 62:

Released	2018-04-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional AAC/APH (protein)
Unique Ligands	CL, GNP, MG

1 to 17 of 17 Structures

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4ORK | pdb_00004ork

Crystal Structure of the Phosphotransferase Domain of the Bifunctional Aminoglycoside Resistance Enzyme AAC(6')-Ie-APH(2'')-Ia

5BYL | pdb_00005byl

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) in complex with GMPPCP and Magnesium

5IQA | pdb_00005iqa

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) in complex with GMPPNP and Magnesium

5IQB | pdb_00005iqb

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) in complex with GMPPNP, Magnesium, and Kanamycin A

5IQC | pdb_00005iqc

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) in complex with GMPPNP, Magnesium, and Gentamicin C1

5IQD | pdb_00005iqd

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) in complex with GMPPNP, Magnesium, and Ribostamycin

5IQE | pdb_00005iqe

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) in complex with GMPPNP, Magnesium, and Neomycin B

5IQF | pdb_00005iqf

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of APH(6')-Ie/APH(2'')-Ia) in complex with GDP and Magnesium

5IQG | pdb_00005iqg

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) in complex with GDP, Magnesium, and Gentamicin C1

5IQH | pdb_00005iqh

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) S214A mutant in complex with GMPPNP and Magnesium

5IQI | pdb_00005iqi

Aminoglycoside Phosphotransferase (2'')-Ia (CTD of AAC(6')-Ie/APH(2'')-Ia) Y237F mutant in complex with GMPPNP and Magnesium

6C5U | pdb_00006c5u

Aminoglycoside Phosphotransferase (2'')-Ia in complex with GMPPNP, Magnesium, and Ribostamycin, Alternate form

6CAV | pdb_00006cav

Aminoglycoside Phosphotransferase (2'')-Ia in complex with GMPPNP, Magnesium, and Dibekacin

6CEY | pdb_00006cey

Aminoglycoside Phosphotransferase (2'')-Ia in complex with GMPPNP, Magnesium, and Lividomycin moieties

6CGD | pdb_00006cgd

Aminoglycoside Phosphotransferase (2'')-Ia in complex with GMPPNP, Magnesium, and Amikacin

6CGG | pdb_00006cgg

Aminoglycoside Phosphotransferase (2'')-Ia in complex with GMPPNP, Magnesium, and Arbekacin

6CH4 | pdb_00006ch4

Aminoglycoside Phosphotransferase (2'')-Ia S376N mutant in complex with GMPPNP and Magnesium

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

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Release Date

Enzyme Classification Name

Symmetry Type

4ORK | pdb_00004ork

5BYL | pdb_00005byl

5IQA | pdb_00005iqa

5IQB | pdb_00005iqb

5IQC | pdb_00005iqc

5IQD | pdb_00005iqd

5IQE | pdb_00005iqe

5IQF | pdb_00005iqf

5IQG | pdb_00005iqg

5IQH | pdb_00005iqh

5IQI | pdb_00005iqi

6C5U | pdb_00006c5u

6CAV | pdb_00006cav

6CEY | pdb_00006cey

6CGD | pdb_00006cgd

6CGG | pdb_00006cgg

6CH4 | pdb_00006ch4