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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "NAT13"

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

Homo sapiens (22)

Taxonomy

Eukaryota (22)

Experimental Method

X-RAY DIFFRACTION (22)

Polymer Entity Type

Protein (22)

Refinement Resolution (Å)

	1.5 - 2.0 (18)
	2.0 - 2.5 (3)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (16)
	2010 - 2014 (3)
	2015 - 2019 (2)

Symmetry Type

Cyclic (22)

SCOP Classification

	Alpha and beta proteins (a+b) (21)
	Coiled coil proteins (20)
	Artifacts (2)

AllSelected

1 to 22 of 22 Structures

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1PW9 \| pdb_00001pw9	Download File View File

High resolution crystal structure of an active recombinant fragment of human lung surfactant protein D

Shrive, A.K., Tharia, H.A., Strong, P., Kishore, U., Burns, I., Rizkallah, P.J., Reid, K.B., Greenhough, T.J.

(2003) J Mol Biology 331: 509-523

Released	2003-08-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA

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2ORJ \| pdb_00002orj	Download File View File

crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with N-acetyl mannosamine

Head, J.F.

(2007) Biochemistry 46: 5160-5169

Released	2007-05-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	BM3, CA

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2ORK \| pdb_00002ork	Download File View File

crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with inositol-1-phosphate

Head, J.F.

(2007) Biochemistry 46: 5160-5169

Released	2007-05-08
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA, IPD

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2OS9 \| pdb_00002os9	Download File View File

crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with myoinositol

Head, J.F.

(2007) Biochemistry 46: 5160-5169

Released	2007-05-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA, INS

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2RIA \| pdb_00002ria	Download File View File

Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with D-glycero-D-manno-heptose

Wang, H., Head, J., Kosma, P., Sheikh, S., McDonald, B., Smith, K., Cafarella, T., Seaton, B., Crouch, E.

(2008) Biochemistry 47: 710-720

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	289, CA

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2RIB \| pdb_00002rib	Download File View File

Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with L-glycero-D-manno-heptose

Wang, H., Head, J., Kosma, P., Sheikh, S., McDonald, B., Smith, K., Cafarella, T., Seaton, B., Crouch, E.

(2008) Biochemistry 47: 710-720

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA, GMH

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2RIC \| pdb_00002ric	Download File View File

Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with L-glycero-D-manno-heptopyranosyl-(1-3)-L-glycero-D-manno-heptopyranose

Wang, H., Head, J., Kosma, P., Sheikh, S., McDonald, B., Smith, K., Cafarella, T., Seaton, B., Crouch, E.

(2008) Biochemistry 47: 710-720

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA, GMH
Unique branched monosaccharides	GMH

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2RID \| pdb_00002rid	Download File View File

Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with Allyl 7-O-carbamoyl-L-glycero-D-manno-heptopyranoside

Wang, H., Head, J., Kosma, P., Sheikh, S., McDonald, B., Smith, K., Cafarella, T., Seaton, B., Crouch, E.

(2008) Biochemistry 47: 710-720

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	291, CA

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2RIE \| pdb_00002rie	Download File View File

Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with 2-deoxy-L-glycero-D-manno-heptose

Wang, H., Head, J., Kosma, P., Sheikh, S., McDonald, B., Smith, K., Cafarella, T., Seaton, B., Crouch, E.

(2008) Biochemistry 47: 710-720

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	293, CA

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3DBZ \| pdb_00003dbz	Download File View File

human surfactant protein D

Head, J.F.

(2008) Biochemistry 47: 8103-8113

Released	2008-08-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA, MPD

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3G81 \| pdb_00003g81	Download File View File

Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with alpha methyl mannoside

Head, J.F.

(2009) Biochemistry 48: 3335-3345

Released	2009-03-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA, MMA

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3G83 \| pdb_00003g83	Download File View File

Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with alpha 1,2 dimannose.

Head, J.F.

(2009) Biochemistry 48: 3335-3345

Released	2009-03-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA
Unique branched monosaccharides	MAN

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3G84 \| pdb_00003g84	Download File View File

Crystal structure of the trimeric neck and carbohydrate recognition domain of R343V mutant of human surfactant protein D in complex with alpha 1,2 dimannose.

Head, J.F.

(2009) Biochemistry 48: 3335-3345

Released	2009-03-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA
Unique branched monosaccharides	MAN

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3IKN \| pdb_00003ikn	Download File View File

Crystal structure of galactose bound trimeric human lung surfactant protein D

Shrive, A.K., Greenhough, T.J.

(2009) J Mol Biology 394: 776-788

Released	2009-11-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA, GAL

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3IKP \| pdb_00003ikp	Download File View File

Crystal structure of inositol phosphate bound trimeric human lung surfactant protein D

Shrive, A.K., Greenhough, T.J.

(2009) J Mol Biology 394: 776-788

Released	2009-11-17
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA, IPD

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3IKQ \| pdb_00003ikq	Download File View File

Crystal structure of alpha 1-2 mannobiose bound trimeric human lung surfactant protein D

Shrive, A.K., Greenhough, T.J.

(2009) J Mol Biology 394: 776-788

Released	2009-11-17
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA, MAN

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3IKR \| pdb_00003ikr	Download File View File

Crystal structure of alpha 1-4 mannobiose bound trimeric human lung surfactant protein D

Shrive, A.K., Greenhough, T.J.

(2009) J Mol Biology 394: 776-788

Released	2009-11-17
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA, MAN

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4E52 \| pdb_00004e52	Download File View File

Crystal structure of Haemophilus Eagan 4A polysaccharide bound human lung surfactant protein D

Shrive, A.K., Greenhough, T.J.

(2016) Infect Immun 84: 1585-1592

Released	2013-03-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA
Unique branched monosaccharides	GMH, KD5

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4M17 \| pdb_00004m17	Download File View File

Crystal Structure of Surfactant Protein-D D325A/R343V mutant

Goh, B.C., Rynkiewicz, M.J., Cafarella, T.R., White, M.R., Hartshorn, K.L., Allen, K., Crouch, E.C., Calin, O., Seeberger, P.H., Schulten, K., Seaton, B.A.

(2013) Biochemistry 52: 8527-8538

Released	2013-12-04
Method	X-RAY DIFFRACTION 2.096 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA

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4M18 \| pdb_00004m18	Download File View File

Crystal Structure of Surfactant Protein-D D325A/R343V mutant in complex with trimannose (Man-a1,2Man-a1,2Man)

Goh, B.C., Rynkiewicz, M.J., Cafarella, T.R., White, M.R., Hartshorn, K.L., Allen, K., Crouch, E.C., Calin, O., Seeberger, P.H., Schulten, K., Seaton, B.A.

(2013) Biochemistry 52: 8527-8538

Released	2013-12-04
Method	X-RAY DIFFRACTION 3.203 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA
Unique branched monosaccharides	MAN

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5OXR \| pdb_00005oxr	Download File View File

Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R7 oligosaccharide

Shrive, A.K., Greenhough, T.J.

(2018) PLoS One 13: e0199175-e0199175

Released	2018-06-20
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA
Unique branched monosaccharides	GMH, K5B

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5OXS \| pdb_00005oxs	Download File View File

Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R5 oligosaccharide

Shrive, A.K., Greenhough, T.J.

(2018) PLoS One 13: e0199175-e0199175

Released	2018-06-20
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA
Unique branched monosaccharides	GLC, GMH, K5B

1 to 22 of 22 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

1PW9 | pdb_00001pw9

2ORJ | pdb_00002orj

2ORK | pdb_00002ork

2OS9 | pdb_00002os9

2RIA | pdb_00002ria

2RIB | pdb_00002rib

2RIC | pdb_00002ric

2RID | pdb_00002rid

2RIE | pdb_00002rie

3DBZ | pdb_00003dbz

3G81 | pdb_00003g81

3G83 | pdb_00003g83

3G84 | pdb_00003g84

3IKN | pdb_00003ikn

3IKP | pdb_00003ikp

3IKQ | pdb_00003ikq

3IKR | pdb_00003ikr

4E52 | pdb_00004e52

4M17 | pdb_00004m17

4M18 | pdb_00004m18

5OXR | pdb_00005oxr

5OXS | pdb_00005oxs