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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Zhang, K.Y.J."

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Search Summary

This query matches 3,189 Structures.

Refinements

Structure Determination Methodology

experimental (3,189)

Scientific Name of Source Organism

	Homo sapiens (1,098)
	synthetic construct (260)
	Bacillus thermoproteolyticus (188)
	Mus musculus (113)
	Escherichia coli (108)
	Trypanosoma cruzi (69)
	Staphylococcus aureus (64)
	Escherichia coli K-12 (58)
	Lacticaseibacillus casei (51)
	Human immunodeficiency virus 1 (30)

More...

Taxonomy

	Eukaryota (1,659)
	Bacteria (1,257)
	other sequences (260)
	Riboviria (108)
	Archaea (42)
	Varidnaviria (23)
	Duplodnaviria (18)
	Eukaryota (eukaryotes) (15)
	Monodnaviria (5)
	unclassified sequences (2)

More...

Experimental Method

	X-RAY DIFFRACTION (3,178)
	NEUTRON DIFFRACTION (8)
	ELECTRON CRYSTALLOGRAPHY (2)
	POWDER DIFFRACTION (1)

Polymer Entity Type

	Protein (3,095)
	DNA (122)
	RNA (76)
	NA-hybrid (10)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (216)
	1.5 - 2.0 (891)
	2.0 - 2.5 (1,052)
	2.5 - 3.0 (723)
	3.0 - 3.5 (244)
	3.5 - 4.0 (45)
	4.0 - 4.5 (9)
	> 4.5 (6)

Release Date

	1980 - 1984 (4)
	1985 - 1989 (8)
	1990 - 1994 (28)
	1995 - 1999 (151)
	2000 - 2004 (254)
	2005 - 2009 (509)
	2010 - 2014 (691)
	2015 - 2019 (650)
	2020 - 2024 (846)
	2025 - 2029 (48)

Enzyme Classification Name

	Hydrolases (703)
	Transferases (618)
	Oxidoreductases (343)
	Lyases (74)
	Ligases (93)
	Isomerases (64)
	Translocases (17)

Membrane Protein Annotation

	PDBTM (19)
	MemProtMD (16)
	OPM (25)
	mpstruc (20)

Symmetry Type

	Asymmetric (1,711)
	Cyclic (1,363)
	Dihedral (202)
	Tetrahedral (3)

SCOP Classification

	Alpha and beta proteins (a+b) (750)
	Alpha and beta proteins (a/b) (374)
	All beta proteins (367)
	All alpha proteins (324)
	Artifacts (194)
	Membrane and cell surface proteins and peptides (11)
	Multi-domain proteins (alpha and beta) (15)
	Small proteins (17)
	Coiled coil proteins (2)
	Peptides (1)

AllSelected

1 to 25 of 3,189 Structures

Page 1 of 128

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116D \| pdb_0000116d	Download File View File

CRYSTAL AND MOLECULAR STRUCTURE OF THE A-DNA DODECAMER D(CCGTACGTACGG): CHOICE OF FRAGMENT HELICAL AXIS

Bingman, C.A., Zon, G., Sundaralingam, M.

(1992) J Mol Biology 227: 738-756

Released	1993-04-15
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	DNA (5'-D(CPCPGPTPAPCPGPTPAPCPGPG)-3') (nucleic acid)

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117D \| pdb_0000117d	Download File View File

CRYSTAL AND MOLECULAR STRUCTURE OF THE ALTERNATING DODECAMER D(GCGTACGTACGC) IN THE A-DNA FORM: COMPARISON WITH THE ISOMORPHOUS NON-ALTERNATING DODECAMER D(CCGTACGTACGG)

Bingman, C.A., Jain, S., Zon, G., Sundaralingam, M.

(1992) Nucleic Acids Res 20: 6637-6647

Released	1993-04-15
Method	X-RAY DIFFRACTION 2.55 Å
Macromolecule	DNA (5'-D(GPCPGPTPAPCPGPTPAPCPGPC)-3') (nucleic acid)

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138D \| pdb_0000138d	Download File View File

A-DNA DECAMER D(GCGGGCCCGC)-HEXAGONAL CRYSTAL FORM

Ramakrishnan, B., Sundaralingam, M.

(1993) Biochemistry 32: 11458-11468

Released	1994-01-15
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	DNA (5'-D(GPCPGPGPGPCPCPCPGPC)-3') (nucleic acid)

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1A4E \| pdb_00001a4e	Download File View File

CATALASE A FROM SACCHAROMYCES CEREVISIAE

Mate, M.J.

(1999) J Mol Biology 286: 135-149

Released	1999-08-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CATALASE A (protein)
Unique Ligands	AZI, HEM, SO4

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1A69 \| pdb_00001a69	Download File View File

PURINE NUCLEOSIDE PHOSPHORYLASE IN COMPLEX WITH FORMYCIN B AND SULPHATE (PHOSPHATE)

Koellner, G., Luic, M., Shugar, D., Saenger, W., Bzowska, A.

(1998) J Mol Biology 280: 153-166

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	PURINE NUCLEOSIDE PHOSPHORYLASE (protein)
Unique Ligands	FMB, SO4

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1A7G \| pdb_00001a7g	Download File View File

THE CRYSTAL STRUCTURE OF THE E2 DNA-BINDING DOMAIN FROM HUMAN PAPILLOMAVIRUS AT 2.4 ANGSTROMS

Bussiere, D.E., Giranda, V.L.

(1998) Acta Crystallogr D Biol Crystallogr 54: 1367-1376

Released	1999-04-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	human papillomavirus 31
Macromolecule	REGULATORY PROTEIN E2 (protein)
Unique Ligands	SO4

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1A7H \| pdb_00001a7h	Download File View File

GAMMA S CRYSTALLIN C-TERMINAL DOMAIN

Basak, A.K., Slingsby, C.

(1998) Protein Eng 11: 337-344

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Bos taurus
Macromolecule	GAMMAS CRYSTALLIN (protein)

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1AM9 \| pdb_00001am9	Download File View File

HUMAN SREBP-1A BOUND TO LDL RECEPTOR PROMOTER

Parraga, A., Burley, S.K.

(1998) Structure 6: 661-672

Released	1998-07-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (STEROL REGULATORY ELEMENT BINDING PROTEIN 1A) (protein) DNA (5'-D(CPAPTPGPAPGPAPTPCPAPCPCPCPCPAPCPT PGPCPAPA)-3') (nucleic acid) DNA (5'-D(TPTPGPCPAPGPTPGPGPGPGPTPGPAPTPCPT )-3') (nucleic acid)
Unique Ligands	MG

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1AMP \| pdb_00001amp	Download File View File

CRYSTAL STRUCTURE OF AEROMONAS PROTEOLYTICA AMINOPEPTIDASE: A PROTOTYPICAL MEMBER OF THE CO-CATALYTIC ZINC ENZYME FAMILY

Chevrier, B., Schalk, C., D'Orchymont, H., Rondeau, J.M., Moras, D., Tarnus, C.

(1994) Structure 2: 283-291

Released	1994-08-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Vibrio proteolyticus
Macromolecule	AMINOPEPTIDASE (protein)
Unique Ligands	ZN

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1AN2 \| pdb_00001an2	Download File View File

RECOGNITION BY MAX OF ITS COGNATE DNA THROUGH A DIMERIC B/HLH/Z DOMAIN

Ferre-D'Amare, A.R., Prendergast, G.C., Ziff, E.B., Burley, S.K.

(1993) Nature 363: 38-45

Released	1997-09-17
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	PROTEIN (TRANSCRIPTION FACTOR MAX (TF MAX)) (protein) DNA (5'-D(GPTPGPTPAPGPGPTPCPAPCPGPTPGPAPCPC PTPAPCPAPC)- 3') (nucleic acid)

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1AP6 \| pdb_00001ap6	Download File View File

TYR34->PHE MUTANT OF HUMAN MITOCHONDRIAL MANGANESE SUPEROXIDE DISMUTASE

Guan, Y., Tainer, J.A.

(1998) Biochemistry 37: 4722-4730

Released	1998-01-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	MANGANESE SUPEROXIDE DISMUTASE (protein)
Unique Ligands	MN

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1AR2 \| pdb_00001ar2	Download File View File

DISULFIDE-FREE IMMUNOGLOBULIN FRAGMENT

Uson, I., Bes, M.T., Sheldrick, G.M., Schneider, T.R., Hartsch, T., Fritz, H.-J.

(1997) Structure 2: 357-361

Released	1997-11-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	REI (protein)

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1AW8 \| pdb_00001aw8	Download File View File

PYRUVOYL DEPENDENT ASPARTATE DECARBOXYLASE

Albert, A., Dhanaraj, V., Genschel, U., Khan, G., Ramjee, M.K., Pulido, R., Sybanda, B.L., von Delf, F., Witty, M., Blundell, T.L., Smith, A.G., Abell, C.

(1998) Nat Struct Biol 5: 289-293

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	L-ASPARTATE-ALPHA-DECARBOXYLASE (protein)

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1BBU \| pdb_00001bbu	Download File View File

LYSYL-TRNA SYNTHETASE (LYSS) COMPLEXED WITH LYSINE

Onesti, S., Desogus, G., Brevet, A., Chen, J., Plateau, P., Blanquet, S., Brick, P.

(2000) Biochemistry 39: 12853-12861

Released	2000-11-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli K-12
Macromolecule	PROTEIN (LYSYL-TRNA SYNTHETASE) (protein)
Unique Ligands	LYS

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1BBW \| pdb_00001bbw	Download File View File

LYSYL-TRNA SYNTHETASE (LYSS)

Onesti, S., Desogus, G., Brevet, A., Chen, J., Plateau, P., Blanquet, S., Brick, P.

(2000) Biochemistry 39: 12853-12861

Released	2000-11-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli K-12
Macromolecule	PROTEIN (LYSYL-TRNA SYNTHETASE) (protein)

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1BDG \| pdb_00001bdg	Download File View File

HEXOKINASE FROM SCHISTOSOMA MANSONI COMPLEXED WITH GLUCOSE

Mulichak, A.M., Garavito, R.M.

(1998) Nat Struct Biol 5: 555-560

Released	1999-05-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Schistosoma mansoni
Macromolecule	HEXOKINASE (protein)
Unique Ligands	GLC, SO4

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1BO7 \| pdb_00001bo7	Download File View File

THYMIDYLATE SYNTHASE R179T MUTANT

Morse, R., Finer-Moore, J., Stroud, R.M.

(2000) Biochemistry 39: 1011-1020

Released	1998-08-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Lacticaseibacillus casei
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	U5P

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1BO8 \| pdb_00001bo8	Download File View File

THYMIDYLATE SYNTHASE R178T MUTANT

Morse, R., Finer-Moore, J., Stroud, R.M.

(2000) Biochemistry 39: 1011-1020

Released	1998-08-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Lacticaseibacillus casei
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	K, U5P

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1BOG \| pdb_00001bog	Download File View File

ANTI-P24 (HIV-1) FAB FRAGMENT CB41 COMPLEXED WITH AN EPITOPE-HOMOLOGOUS PEPTIDE

Keitel, T., Kramer, A., Wessner, H., Scholz, C., Schneider-Mergener, J., Hoehne, W.

(1997) Cell 91: 811-820

Released	1999-03-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	ANTIBODY (CB 4-1) (protein) PEPTIDE (protein)

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1BP0 \| pdb_00001bp0	Download File View File

THYMIDYLATE SYNTHASE R23I MUTANT

Morse, R., Finer-Moore, J., Stroud, R.M.

(2000) Biochemistry 39: 1011-1020

Released	2000-01-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Lacticaseibacillus casei
Macromolecule	PROTEIN (THYMIDYLATE SYNTHASE) (protein)
Unique Ligands	K, UMP

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1BP6 \| pdb_00001bp6	Download File View File

THYMIDYLATE SYNTHASE R23I, R179T DOUBLE MUTANT

Morse, R.J., Finer-Moore, J.S., Stroud, R.M.

(2000) Biochemistry 39: 1011-1020

Released	1998-08-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Lacticaseibacillus casei
Macromolecule	PROTEIN (THYMIDYLATE SYNTHASE) (protein)
Unique Ligands	K, UMP

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1BPJ \| pdb_00001bpj	Download File View File

THYMIDYLATE SYNTHASE R178T, R179T DOUBLE MUTANT

Morse, R.J., Finer-Moore, J.S., Stroud, R.M.

(2000) Biochemistry 39: 1011-1020

Released	1998-08-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Lacticaseibacillus casei
Macromolecule	PROTEIN (THYMIDYLATE SYNTHASE) (protein)
Unique Ligands	K, UMP

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1BR3 \| pdb_00001br3	Download File View File

CRYSTAL STRUCTURE OF AN 82-NUCLEOTIDE RNA-DNA COMPLEX FORMED BY THE 10-23 DNA ENZYME

Nowakowski, J., Shim, P.J., Prasad, G.S., Stout, C.D., Joyce, G.F.

(1999) Nat Struct Biol 6: 151-156

Released	1999-02-23
Method	X-RAY DIFFRACTION 3 Å
Macromolecule	DNA (10-23 DNA ENZYME) (nucleic acid) RNA (5'-R(GPGPAPCPAPGPAPUPGPGPGPAP*G)-3') (nucleic acid)

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1BZX \| pdb_00001bzx	Download File View File

THE CRYSTAL STRUCTURE OF ANIONIC SALMON TRYPSIN IN COMPLEX WITH BOVINE PANCREATIC TRYPSIN INHIBITOR

Helland, R., Leiros, I., Berglund, G.I., Willassen, N.P., Smalas, A.O.

(1998) Eur J Biochem 256: 317-324

Released	1998-11-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus Salmo salar
Macromolecule	PROTEIN (BOVINE PANCREATIC TRYPSIN INHIBITOR) (protein) PROTEIN (TRYPSIN) (protein)
Unique Ligands	CA