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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wu, P."

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Search Summary

This query matches 138 Structures.

Refinements

Structure Determination Methodology

experimental (138)

Scientific Name of Source Organism

	Homo sapiens (100)
	synthetic construct (10)
	Mus musculus (5)
	Saccharomyces cerevisiae S288C (5)
	Acinetobacter baumannii (4)
	Drosophila melanogaster (4)
	Escherichia coli (4)
	unclassified Marinobacter (4)
	Staphylococcus aureus (3)
	Mycobacterium tuberculosis (2)

More...

Taxonomy

	Eukaryota (118)
	Bacteria (21)
	other sequences (10)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (132)
	SOLUTION NMR (5)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (135)
	RNA (5)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (32)
	2.0 - 2.5 (47)
	2.5 - 3.0 (39)
	3.0 - 3.5 (5)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (23)
	2010 - 2014 (28)
	2015 - 2019 (35)
	2020 - 2024 (42)
	2025 - 2029 (9)

Enzyme Classification Name

	Transferases (57)
	Hydrolases (23)
	Oxidoreductases (12)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (82)
	Cyclic (59)
	Dihedral (9)

SCOP Classification

	All beta proteins (34)
	Alpha and beta proteins (a+b) (28)
	Artifacts (12)
	Alpha and beta proteins (a/b) (4)
	Small proteins (5)
	All alpha proteins (6)

AllSelected

1 to 25 of 138 Structures

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1NGN \| pdb_00001ngn	Download File View File

Mismatch repair in methylated DNA. Structure of the mismatch-specific thymine glycosylase domain of methyl-CpG-binding protein MBD4

Wu, P., Qiu, C., Sohail, A., Zhang, X., Bhagwat, A.S., Cheng, X.

(2003) J Biological Chem 278: 5285-5291

Released	2003-03-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	methyl-CpG binding protein MBD4 (protein)

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2AQ5 \| pdb_00002aq5	Download File View File

Crystal Structure of Murine Coronin-1

Appleton, B.A., Wu, P., Wiesmann, C.

(2006) Structure 14: 87-96

Released	2005-12-06
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mus musculus
Macromolecule	Coronin-1A (protein)

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2B4E \| pdb_00002b4e	Download File View File

Crystal Structure of Murine Coronin-1: monoclinic form

Appleton, B.A., Wu, P., Wiesmann, C.

(2006) Structure 14: 87-96

Released	2005-12-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	Coronin-1A (protein)

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2FJF \| pdb_00002fjf	Download File View File

Structure of the G6 Fab, a phage derived VEGF binding Fab

Wiesmann, C.

(2006) J Biological Chem 281: 6625-6631

Released	2006-02-07
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Heavy Chain of a VEGF binding Antibody (protein) Light Chain of a VEGF binding Antibody (protein)

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2FJG \| pdb_00002fjg	Download File View File

Structure of the G6 Fab, a phage derived Fab fragment, in complex with VEGF

Wiesmann, C.

(2006) J Biological Chem 281: 6625-6631

Released	2006-02-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Fab heavy chain (protein) Fab light chain (protein) Vascular endothelial growth factor A (protein)
Unique Ligands	SO4

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2FJH \| pdb_00002fjh	Download File View File

Structure of the B20-4 Fab, a phage derived Fab fragment, in complex with VEGF

Wiesmann, C.

(2006) J Biological Chem 281: 6625-6631

Released	2006-02-07
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Fab fragment heavy chain (protein) Fab fragment light chain (protein) Vascular endothelial growth factor A (protein)

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2H2B \| pdb_00002h2b	Download File View File

Crystal Structure of ZO-1 PDZ1 Bound to a Phage-Derived Ligand (WRRTTYL)

Appleton, B.A., Zhang, Y., Wu, P., Yin, J.P., Hunziker, W., Skelton, N.J., Sidhu, S.S., Wiesmann, C.

(2006) J Biological Chem 281: 22312-22320

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Tight junction protein ZO-1 (protein)
Unique Ligands	ACY

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2H2C \| pdb_00002h2c	Download File View File

Crystal Structure of ZO-1 PDZ1 Bound to a Phage-Derived Ligand (WRRTTWV)

Appleton, B.A., Zhang, Y., Wu, P., Yin, J.P., Hunziker, W., Skelton, N.J., Sidhu, S.S., Wiesmann, C.

(2006) J Biological Chem 281: 22312-22320

Released	2006-06-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Tight junction protein ZO-1 (protein)

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2H3L \| pdb_00002h3l	Download File View File

Crystal Structure of ERBIN PDZ

Appleton, B.A., Zhang, Y., Wu, P., Yin, J.P., Hunziker, W., Skelton, N.J., Sidhu, S.S., Wiesmann, C.

(2006) J Biological Chem 281: 22312-22320

Released	2006-06-13
Method	X-RAY DIFFRACTION 1 Å
Organisms	Homo sapiens
Macromolecule	LAP2 protein (protein)

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2H3M \| pdb_00002h3m	Download File View File

Crystal Structure of ZO-1 PDZ1

Appleton, B.A., Zhang, Y., Wu, P., Yin, J.P., Hunziker, W., Skelton, N.J., Sidhu, S.S., Wiesmann, C.

(2006) J Biological Chem 281: 22312-22320

Released	2006-06-13
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Tight junction protein ZO-1 (protein)
Unique Ligands	SO4

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2I4T \| pdb_00002i4t	Download File View File

Crystal structure of Purine Nucleoside Phosphorylase from Trichomonas vaginalis with Imm-A

Rinaldo-Matthis, A., Schramm, V.L., Almo, S.C.

(2007) Biochemistry 46: 659-668

Released	2007-06-05
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Trichomonas vaginalis
Macromolecule	Trichomonas vaginalis purine nucleoside phosphorylase (protein)
Unique Ligands	PO4, UA2

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2ISC \| pdb_00002isc	Download File View File

Crystal structure of Purine Nucleoside Phosphorylase from Trichomonas vaginalis with DADMe-Imm-A

Rinaldo-Matthis, A., Almo, S.C., Schramm, V.L.

(2007) Biochemistry 46: 659-668

Released	2007-06-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Trichomonas vaginalis
Macromolecule	purine nucleoside phosphorylase (protein)
Unique Ligands	223, PO4

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2JOA \| pdb_00002joa	Download File View File

HtrA1 bound to an optimized peptide: NMR assignment of PDZ domain and ligand resonances

Runyon, S.T., Zhang, Y., Appleton, B.A., Sazinksy, S.L., Wu, P., Pan, B., Wiesmann, C., Skelton, N.J., Sidhu, S.S.

(2007) Protein Sci 16: 2454-2471

Released	2007-11-20
Method	SOLUTION NMR
Organisms	Homo sapiens synthetic construct
Macromolecule	Peptide H1-C1 (protein) Serine protease HTRA1 (protein)

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2LKZ \| pdb_00002lkz	Download File View File

Solution structure of the second RRM domain of RBM5

Song, Z., Wu, P., Zhang, J., Wu, J., Shi, Y.

(2012) Biochemistry

Released	2012-08-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	RNA-binding protein 5 (protein)

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2P3W \| pdb_00002p3w	Download File View File

Crystal Structure of the HtrA3 PDZ Domain Bound to a Phage-Derived Ligand (FGRWV)

Appleton, B.A., Wiesmann, C.

(2007) Protein Sci 16: 2454-2471

Released	2007-11-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Probable serine protease HTRA3 (protein)

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2PZD \| pdb_00002pzd	Download File View File

Crystal Structure of the HtrA2/Omi PDZ Domain Bound to a Phage-Derived Ligand (WTMFWV)

Appleton, B.A., Wiesmann, C.

(2007) Protein Sci 16: 1738-1750

Released	2007-08-07
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Serine protease HTRA2 (protein)
Unique Ligands	EDO

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2QQI \| pdb_00002qqi	Download File View File

Crystal Structure of the b1b2 Domains from Human Neuropilin-1

Appleton, B.A., Desmarais, W., Wiesmann, C.

(2007) EMBO J 26: 4902-4912

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Neuropilin-1 (protein)
Unique Ligands	GOL

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2QQJ \| pdb_00002qqj	Download File View File

Crystal Structure of the b1b2 Domains from Human Neuropilin-2

Appleton, B.A., Wiesmann, C.

(2007) EMBO J 26: 4902-4912

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Neuropilin-2 (protein)
Unique Ligands	GOL

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2QQK \| pdb_00002qqk	Download File View File

Neuropilin-2 a1a2b1b2 Domains in Complex with a Semaphorin-Blocking Fab

Appleton, B.A., Wiesmann, C.

(2007) EMBO J 26: 4902-4912

Released	2007-11-20
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Antibody Heavy Chain (protein) Antibody Light Chain (protein) Neuropilin-2 (protein)
Unique Ligands	NAG

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2QQL \| pdb_00002qql	Download File View File

Neuropilin-2 a1a2b1b2 Domains in Complex with a Semaphorin-Blocking Fab

Appleton, B.A., Wiesmann, C.

(2007) EMBO J 26: 4902-4912

Released	2007-11-20
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Antibody Heavy Chain (protein) Antibody Light Chain (protein) Neuropilin-2 (protein)

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2QQM \| pdb_00002qqm	Download File View File

Crystal Structure of the a2b1b2 Domains from Human Neuropilin-1

Appleton, B.A., Wiesmann, C.

(2007) EMBO J 26: 4902-4912

Released	2007-11-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Neuropilin-1 (protein)
Unique Ligands	CA, EDO
Unique branched monosaccharides	FUC, NAG

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2QQN \| pdb_00002qqn	Download File View File

Neuropilin-1 b1 Domain in Complex with a VEGF-Blocking Fab

Appleton, B.A., Wiesmann, C.

(2007) EMBO J 26: 4902-4912

Released	2007-11-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Antibody heavy chain (protein) Antibody light chain (protein) Neuropilin-1 (protein)
Unique Ligands	EDO

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2QQO \| pdb_00002qqo	Download File View File

Crystal Structure of the a2b1b2 Domains from Human Neuropilin-2

Appleton, B.A., Wiesmann, C.

(2007) EMBO J 26: 4902-4912

Released	2007-11-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Neuropilin-2 (protein)
Unique Ligands	CA, EDO, TRS

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3B9V \| pdb_00003b9v	Download File View File

Crystal Structure of an Autonomous VH Domain

Appleton, B.A., Barthelemy, P.A., Wiesmann, C.

(2008) J Biological Chem 283: 3639-3654

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	heavy chain variable domain (protein)

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3GRW \| pdb_00003grw	Download File View File

FGFR3 in complex with a Fab

Wiesmann, C.

(2009) J Clin Invest 119: 1216-1229

Released	2009-05-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Fab heavy chain (protein) Fab light chain (protein) Fibroblast growth factor receptor 3 (protein)
Unique Ligands	NAG, SO4

1 to 25 of 138 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1NGN | pdb_00001ngn

2AQ5 | pdb_00002aq5

2B4E | pdb_00002b4e

2FJF | pdb_00002fjf

2FJG | pdb_00002fjg

2FJH | pdb_00002fjh

2H2B | pdb_00002h2b

2H2C | pdb_00002h2c

2H3L | pdb_00002h3l

2H3M | pdb_00002h3m

2I4T | pdb_00002i4t

2ISC | pdb_00002isc

2JOA | pdb_00002joa

2LKZ | pdb_00002lkz

2P3W | pdb_00002p3w

2PZD | pdb_00002pzd

2QQI | pdb_00002qqi

2QQJ | pdb_00002qqj

2QQK | pdb_00002qqk

2QQL | pdb_00002qql

2QQM | pdb_00002qqm

2QQN | pdb_00002qqn

2QQO | pdb_00002qqo

3B9V | pdb_00003b9v

3GRW | pdb_00003grw