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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Warin, N."

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This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Bacteroides thetaiotaomicron (3)
	Alicyclobacillus sp. (2)
	Aspergillus aculeatus ATCC 16872 (2)
	Aspergillus nidulans FGSC A4 (2)
	Homo sapiens (2)
	Staphylococcus aureus subsp. aureus NCTC 8325 (2)
	Aspergillus niger (1)
	Bacillus sp. KSM-K38 (1)
	Bifidobacterium longum (1)
	Ruminococcus bromii (1)

Taxonomy

	Bacteria (10)
	Eukaryota (7)

Experimental Method

X-RAY DIFFRACTION (16)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (4)
	2.0 - 2.5 (7)
	2.5 - 3.0 (2)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (7)
	2020 - 2024 (7)

Enzyme Classification Name

	Hydrolases (9)
	Transferases (1)

Symmetry Type

	Asymmetric (12)
	Cyclic (4)

SCOP Classification

	Alpha and beta proteins (a/b) (2)
	All beta proteins (1)

AllSelected

1 to 16 of 16 Structures

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4B5Z \| pdb_00004b5z	Download File View File

Structure of the apo-rFnBPA(189-505) from Staphylococcus aureus

Stemberk, V., Moroz, O., Atkin, K.E., Turkenburg, J.P., Potts, J.R.

(2014) J Biological Chem 289: 12842

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus subsp. aureus NCTC 8325
Macromolecule	FIBRONECTIN-BINDING PROTEIN A (protein)

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4B60 \| pdb_00004b60	Download File View File

Structure of rFnBPA(189-505) in complex with fibrinogen gamma chain C- terminal peptide

Stemberk, V., Moroz, O., Atkin, K.E., Turkenburg, J.P., Potts, J.R.

(2014) J Biological Chem 289: 12842

Released	2013-10-09
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens Staphylococcus aureus subsp. aureus NCTC 8325
Macromolecule	FIBRINOGEN GAMMA CHAIN (protein) FIBRONECTIN-BINDING PROTEIN A (protein)
Unique Ligands	CA

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6GXV \| pdb_00006gxv	Download File View File

Amylase in complex with acarbose

Agirre, J., Moroz, O., Meier, S., Brask, J., Munch, A., Hoff, T., Andersen, C., Wilson, K.S., Davies, G.J.

(2019) Acta Crystallogr D Struct Biol 75: 1-7

Released	2019-01-23
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Alicyclobacillus sp.
Macromolecule	A-amylase (protein)
Unique Ligands	BGC, CA, GLC, NA
Unique branched monosaccharides	AC1, GLC

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6GYA \| pdb_00006gya	Download File View File

Amylase in complex with branched ligand

Agirre, J., Moroz, O., Meier, S., Brask, J., Munch, A., Hoff, T., Andersen, C., Wilson, K.S., Davies, G.J.

(2019) Acta Crystallogr D Struct Biol 75: 1-7

Released	2019-01-23
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Alicyclobacillus sp.
Macromolecule	A-amylase (protein)
Unique Ligands	BGC, CA, GLC, NA
Unique branched monosaccharides	GLC

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6Q7I \| pdb_00006q7i	Download File View File

GH3 exo-beta-xylosidase (XlnD)

Davies, G.J., Rowland, R.J., Wu, L., Moroz, O., Blagova, E.

(2019) ACS Cent Sci 5: 1067-1078

Released	2019-06-05
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Exo-1,4-beta-xylosidase xlnD (protein)
Unique Ligands	ACT, EDO, GOL, K, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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6Q7J \| pdb_00006q7j	Download File View File

GH3 exo-beta-xylosidase (XlnD) in complex with xylobiose aziridine activity based probe

Davies, G.J., Rowland, R.J., Wu, L., Moroz, O., Blagova, E.

(2019) ACS Cent Sci 5: 1067-1078

Released	2019-06-05
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Aspergillus nidulans FGSC A4
Macromolecule	Exo-1,4-beta-xylosidase xlnD (protein)
Unique Ligands	EDO, HLB, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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6Q8M \| pdb_00006q8m	Download File View File

GH10 endo-xylanase

Davies, G.J., Rowland, R.J., Wu, L., Moroz, O., Blagova, E.

(2019) ACS Cent Sci 5: 1067-1078

Released	2019-06-05
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Aspergillus aculeatus ATCC 16872
Macromolecule	Beta-xylanase (protein)
Unique Ligands	EDO, K, NAG

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6Q8N \| pdb_00006q8n	Download File View File

GH10 endo-xylanase in complex with xylobiose epoxide inhibitor

Davies, G.J., Rowland, R.J., Wu, L., Moroz, O., Blagova, E.

(2019) ACS Cent Sci 5: 1067-1078

Released	2019-06-05
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Aspergillus aculeatus ATCC 16872
Macromolecule	Beta-xylanase (protein)
Unique Ligands	EDO, HQ8, K, NAG, XYP

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6QE8 \| pdb_00006qe8	Download File View File

Crystal structure of Aspergillus niger GH11 endoxylanase XynA in complex with xylobiose epoxide activity based probe

Wu, L., Rowland, R.J., Davies, G.J.

(2019) ACS Cent Sci 5: 1067-1078

Released	2019-06-05
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Aspergillus niger
Macromolecule	Endo-1,4-beta-xylanase A (protein)
Unique Ligands	HZB, MES, SO4

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8QF2 \| pdb_00008qf2	Download File View File

Beta-L-Arabinofurano-cyclitol Aziridines are Cysteine-directed Broad-spectrum Inhibitors and Activity-based Probes for Retaining Beta-L-arabinofuranosidases

Borlandelli, V., Offen, W.A., Moroz, O., Nin-Hill, A., McGregor, N., Binkhorst, L., Armstrong, Z., Ishiwata, A., Artola, M., Rovira, C., Davies, G.J., Overkleeft, H.

(2023) ACS Chem Biol 18: 2564-2573

Released	2023-12-13
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Bifidobacterium longum
Macromolecule	Non-reducing end beta-L-arabinofuranosidase (protein)
Unique Ligands	UI5, ZN

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8QF8 \| pdb_00008qf8	Download File View File

GH146 beta-L-arabinofuranosidase from Bacteroides thetaioatomicron in complex with beta-l-arabinofurano cyclophellitol aziridine

Borlandelli, V., Offen, W., Moroz, O.V., Nin-Hill, A., McGregor, N., Binkhorst, L., Armstrong, Z., Ishiwata, A., Artola, M., Rovira, C., Davies, G.J., Overkleeft, H.

(2023) ACS Chem Biol 18: 2564-2573

Released	2023-12-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	Glycosyl hydrolase (protein)
Unique Ligands	UHU, UI5, ZN

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9F5H \| pdb_00009f5h	Download File View File

Crystal structure of MGAT5 bump-and-hole mutant in complex with UDP and M592

Liu, Y., Bineva-Todd, G., Meek, R., Mazo, L., Piniello, B., Moroz, O.V., Begum, N., Roustan, C., Tomita, S., Kjaer, S., Rovira, C., Davies, G.J., Schumann, B.

(2024) J Am Chem Soc 146: 26707-26718

Released	2024-10-02
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens
Macromolecule	Secreted alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A (protein)
Unique Ligands	MAN, NAG, SO4, UDP

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9FYZ \| pdb_00009fyz	Download File View File

Crystal structure of SusA amylase from Bacteroides thetaiotaomicron covalently bound to alpha-1,6 branched pseudo-trisaccharide activity-based probe

Pickles, I.B., Moroz, O., Davies, G.

(2025) Angew Chem Int Ed Engl 64: e202415219-e202415219

Released	2024-12-11
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	Neopullulanase SusA (protein)
Unique Ligands	CA, IMD, OC9, PBW
Unique branched monosaccharides	GLC

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9FZ0 \| pdb_00009fz0	Download File View File

Crystal structure of SusG from Bacteroides thetaiotaomicron covalently bound to alpha-1,6 branched pseudo-trisaccharide activity-based probe

Pickles, I.B., Moroz, O., Davies, G.

(2025) Angew Chem Int Ed Engl 64: e202415219-e202415219

Released	2024-12-11
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	Alpha-amylase SusG (protein)
Unique Ligands	A1ILG, ACT, CA, IMD, OC9, PBW
Unique branched monosaccharides	GLC

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9FZ2 \| pdb_00009fz2	Download File View File

Crystal structure of Amylase 5 (Amy5) from Ruminococcus bromii covalently bound to alpha-1,6 branched pseudo-trisaccharide activity-based probe

Pickles, I.B., Moroz, O., Davies, G.

(2025) Angew Chem Int Ed Engl 64: e202415219-e202415219

Released	2024-12-11
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Ruminococcus bromii
Macromolecule	Alpha-amylase (protein)
Unique Ligands	A1IHI, CA, PBW
Unique branched monosaccharides	GLC

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9FZ3 \| pdb_00009fz3	Download File View File

Crystal structure of K38 amylase from Bacillus sp. strain KSM-K38 covalently bound to alpha-1,6 branched pseudo-trisaccharide activity-based probe

Pickles, I.B., Moroz, O., Davies, G.

(2025) Angew Chem Int Ed Engl 64: e202415219-e202415219

Released	2024-12-11
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Bacillus sp. KSM-K38
Macromolecule	Amylase (protein)
Unique Ligands	ACT, NA, OC9, PBW
Unique branched monosaccharides	GLC

1 to 16 of 16 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4B5Z | pdb_00004b5z

Structure of the apo-rFnBPA(189-505) from Staphylococcus aureus

4B60 | pdb_00004b60

Structure of rFnBPA(189-505) in complex with fibrinogen gamma chain C- terminal peptide

6GXV | pdb_00006gxv

Amylase in complex with acarbose

6GYA | pdb_00006gya

Amylase in complex with branched ligand

6Q7I | pdb_00006q7i

GH3 exo-beta-xylosidase (XlnD)

6Q7J | pdb_00006q7j

GH3 exo-beta-xylosidase (XlnD) in complex with xylobiose aziridine activity based probe

6Q8M | pdb_00006q8m

GH10 endo-xylanase

6Q8N | pdb_00006q8n

GH10 endo-xylanase in complex with xylobiose epoxide inhibitor

6QE8 | pdb_00006qe8

Crystal structure of Aspergillus niger GH11 endoxylanase XynA in complex with xylobiose epoxide activity based probe

8QF2 | pdb_00008qf2

Beta-L-Arabinofurano-cyclitol Aziridines are Cysteine-directed Broad-spectrum Inhibitors and Activity-based Probes for Retaining Beta-L-arabinofuranosidases

8QF8 | pdb_00008qf8

GH146 beta-L-arabinofuranosidase from Bacteroides thetaioatomicron in complex with beta-l-arabinofurano cyclophellitol aziridine

9F5H | pdb_00009f5h

Crystal structure of MGAT5 bump-and-hole mutant in complex with UDP and M592

9FYZ | pdb_00009fyz

Crystal structure of SusA amylase from Bacteroides thetaiotaomicron covalently bound to alpha-1,6 branched pseudo-trisaccharide activity-based probe

9FZ0 | pdb_00009fz0

Crystal structure of SusG from Bacteroides thetaiotaomicron covalently bound to alpha-1,6 branched pseudo-trisaccharide activity-based probe

9FZ2 | pdb_00009fz2

Crystal structure of Amylase 5 (Amy5) from Ruminococcus bromii covalently bound to alpha-1,6 branched pseudo-trisaccharide activity-based probe

9FZ3 | pdb_00009fz3

Crystal structure of K38 amylase from Bacillus sp. strain KSM-K38 covalently bound to alpha-1,6 branched pseudo-trisaccharide activity-based probe

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4B5Z | pdb_00004b5z

4B60 | pdb_00004b60

6GXV | pdb_00006gxv

6GYA | pdb_00006gya

6Q7I | pdb_00006q7i

6Q7J | pdb_00006q7j

6Q8M | pdb_00006q8m

6Q8N | pdb_00006q8n

6QE8 | pdb_00006qe8

8QF2 | pdb_00008qf2

8QF8 | pdb_00008qf8

9F5H | pdb_00009f5h

9FYZ | pdb_00009fyz

9FZ0 | pdb_00009fz0

9FZ2 | pdb_00009fz2

9FZ3 | pdb_00009fz3