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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Varshney, U."

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Search Summary

This query matches 120 Structures.

Refinements

Structure Determination Methodology

experimental (120)

Scientific Name of Source Organism

	Mycolicibacterium smegmatis MC2 155 (49)
	Mycobacterium tuberculosis H37Rv (41)
	Mycobacterium tuberculosis (13)
	Bacillus phage PBS2 (4)
	Bradyrhizobium diazoefficiens USDA 110 (4)
	Escherichia coli (4)
	Mycolicibacterium smegmatis (4)
	Mycobacterium leprae TN (2)

Taxonomy

	Bacteria (116)
	Duplodnaviria (4)

Experimental Method

	X-RAY DIFFRACTION (116)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (116)
	DNA (6)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (26)
	1.5 - 2.0 (44)
	2.0 - 2.5 (21)
	2.5 - 3.0 (16)
	3.0 - 3.5 (8)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (12)
	2005 - 2009 (10)
	2010 - 2014 (13)
	2015 - 2019 (50)
	2020 - 2024 (34)

Enzyme Classification Name

	Hydrolases (84)
	Transferases (1)

Symmetry Type

	Asymmetric (99)
	Dihedral (14)
	Cyclic (5)

SCOP Classification

	Alpha and beta proteins (a/b) (30)
	Alpha and beta proteins (a+b) (20)
	All beta proteins (11)
	Artifacts (10)

AllSelected

1 to 25 of 120 Structures

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1DGO \| pdb_00001dgo	Download File View File

SOLUTION STRUCTURE OF A URACIL CONTAINING HAIRPIN DNA

Ghosh, M., Kumar, N.V., Varshney, U., Chary, K.V.R.

(2000) Nucleic Acids Res 28: 1906-1912

Released	2000-05-03
Method	SOLUTION NMR
Macromolecule	URACIL CONTAINING HAIRPIN DNA (nucleic acid)

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1EUI \| pdb_00001eui	Download File View File

ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE COMPLEX WITH URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN

Ravishankar, R., Sagar, M.B., Roy, S., Purnapatre, K., Handa, P., Varshney, U., Vijayan, M.

(1998) Nucleic Acids Res 26: 4880-4887

Released	1999-06-22
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Bacillus phage PBS2 Escherichia coli
Macromolecule	URACIL-DNA GLYCOSYLASE (protein) URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN (protein)

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1I9G \| pdb_00001i9g	Download File View File

CRYSTAL STRUCTURE OF AN ADOMET DEPENDENT METHYLTRANSFERASE

Gupta, A., Kumar, P.H., Dineshkumar, T.K., Varshney, U., Subramanya, H.S., TB Structural Genomics Consortium (TBSGC)

(2001) J Mol Biology 312: 381-391

Released	2001-09-26
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	HYPOTHETICAL PROTEIN RV2118C (protein)
Unique Ligands	SAM

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1IDX \| pdb_00001idx	Download File View File

Structural Basis for Poor Excision from Hairpin DNA: NMR Study

Ghosh, M., Rumpal, N., Varshney, U., Chary, K.V.

(2002) Eur J Biochem 269: 1886-1894

Released	2002-05-08
Method	SOLUTION NMR
Macromolecule	5'-D(APGPGPAPTPCPCPTPTPUPTPGPGPAPTPCPCPT)-3' (nucleic acid)

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1II1 \| pdb_00001ii1	Download File View File

Structural Basis for Poor Uracil Excision from Hairpin DNA: NMR Study

Ghosh, M., Rumpal, N., Varshney, U., Chary, K.V.

(2002) Eur J Biochem 269: 1886-1894

Released	2002-05-08
Method	SOLUTION NMR
Macromolecule	5'-D(APGPGPAPTPCPCPUPTPTPTPGPGPAPTPCPCPT)-3' (nucleic acid)

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1LQG \| pdb_00001lqg	Download File View File

ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE COMPLEX WITH URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN

Saikrishnan, K., Sagar, M.B., Ravishankar, R., Roy, S., Purnapatre, K., Handa, P., Varshney, U., Vijayan, M.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1269-1276

Released	2002-11-10
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bacillus phage PBS2 Escherichia coli
Macromolecule	URACIL-DNA GLYCOSYLASE (protein) URACIL-DNA GLYCOSYLASE INHIBITOR (protein)

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1LQJ \| pdb_00001lqj	Download File View File

ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE

Saikrishnan, K., Sagar, M.B., Ravishankar, R., Roy, S., Purnapatre, K., Varshney, U., Vijayan, M.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1269-1276

Released	2002-11-10
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Escherichia coli
Macromolecule	URACIL-DNA GLYCOSYLASE (protein)

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1LQM \| pdb_00001lqm	Download File View File

ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE COMPLEX WITH URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN

Saikrishnan, K., Sagar, M.B., Ravishankar, R., Roy, S., Purnapatre, K., Varshney, U., Vijayan, M.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1269-1276

Released	2002-11-10
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Bacillus phage PBS2 Escherichia coli
Macromolecule	URACIL-DNA GLYCOSYLASE (protein) URACIL-DNA GLYCOSYLASE INHIBITOR (protein)

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1QE7 \| pdb_00001qe7	Download File View File

SOLUTION STRUCTURE OF A URACIL CONTAINING HAIRPIN DNA

Chary, K.V.R., Ghosh, M.

(1999) Nucleic Acids Res 27: 3938-3944

Released	2000-02-02
Method	SOLUTION NMR
Macromolecule	URACIL CONTAINING HAIRPIN 22-MER DNA (nucleic acid)

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1UE1 \| pdb_00001ue1	Download File View File

Crystal structure of the single-stranded dna-binding protein from mycobacterium tuberculosis

Saikrishnan, K., Jeyakanthan, J., Venkatesh, J., Acharya, N., Sekar, K., Varshney, U., Vijayan, M., TB Structural Genomics Consortium (TBSGC)

(2003) J Mol Biology 331: 385-393

Released	2004-02-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Single-strand binding protein (protein)
Unique Ligands	ZN

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1UE5 \| pdb_00001ue5	Download File View File

Crystal structure of the single-stranded dna-binding protein from mycobacterium tuberculosis

Saikrishnan, K., Jeyakanthan, J., Venkatesh, J., Acharya, N., Sekar, K., Varshney, U., Vijayan, M., TB Structural Genomics Consortium (TBSGC)

(2003) J Mol Biology 331: 385-393

Released	2004-02-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Single-strand binding protein (protein)
Unique Ligands	CD

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1UE6 \| pdb_00001ue6	Download File View File

Crystal structure of the single-stranded dna-binding protein from mycobacterium tuberculosis

Saikrishnan, K., Jeyakanthan, J., Venkatesh, J., Acharya, N., Sekar, K., Varshney, U., Vijayan, M., TB Structural Genomics Consortium (TBSGC)

(2003) J Mol Biology 331: 385-393

Released	2004-02-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Single-strand binding protein (protein)

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1UE7 \| pdb_00001ue7	Download File View File

Crystal structure of the single-stranded dna-binding protein from mycobacterium tuberculosis

Saikrishnan, K., Jeyakanthan, J., Venkatesh, J., Acharya, N., Sekar, K., Varshney, U., Vijayan, M., TB Structural Genomics Consortium (TBSGC)

(2003) J Mol Biology 331: 385-393

Released	2004-02-10
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Single-strand binding protein (protein)

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1WQF \| pdb_00001wqf	Download File View File

Crystal structure of Ribosome recycling factor from Mycobacterium Tuberculosis

Saikrishnan, K., Kalapala, S.K., Varshney, U., Vijayan, M.

(2005) J Mol Biology 345: 29-38

Released	2005-02-22
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Ribosome recycling factor (protein)
Unique Ligands	CD

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1WQG \| pdb_00001wqg	Download File View File

Crystal structure of ribosome recycling factor from Mycobacterium Tuberculosis

Saikrishnan, K., Kalapala, S.K., Varshney, U., Vijayan, M.

(2005) J Mol Biology 345: 29-38

Released	2005-02-22
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Ribosome recycling factor (protein)
Unique Ligands	CD

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1WQH \| pdb_00001wqh	Download File View File

Crystal structure of ribosome recycling factor from Mycobacterium tuberculosis

Saikrishnan, K., Kalapala, S.K., Varshney, U., Vijayan, M.

(2005) J Mol Biology 345: 29-38

Released	2005-02-22
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Ribosome recycling factor (protein)
Unique Ligands	CD

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1X3E \| pdb_00001x3e	Download File View File

Crystal structure of the single-stranded DNA-binding protein from Mycobacterium smegmatis

Saikrishnan, K., Manjunath, G.P., Singh, P., Jeyakanthan, J., Dauter, Z., Sekar, K., Muniyappa, K., Vijayan, M.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1140-1148

Released	2005-08-15
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	Single-strand binding protein (protein)
Unique Ligands	CD

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1X3F \| pdb_00001x3f	Download File View File

Crystal structure of the single-stranded DNA-binding protein from Mycobacterium SMEGMATIS

Saikrishnan, K., Manjunath, G.P., Singh, P., Jeyakanthan, J., Dauter, Z., Sekar, K., Muniyappa, K., Vijayan, M.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1140-1148

Released	2005-08-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	Single-strand binding protein (protein)
Unique Ligands	CD

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1X3G \| pdb_00001x3g	Download File View File

Crystal structure of the single-stranded DNA-binding protein from Mycobacterium SMEGMATIS

Saikrishnan, K., Manjunath, G.P., Singh, P., Jeyakanthan, J., Dauter, Z., Sekar, K., Muniyappa, K., Vijayan, M.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1140-1148

Released	2005-08-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	Single-strand binding protein (protein)
Unique Ligands	CD

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2Z2I \| pdb_00002z2i	Download File View File

Crystal structure of Peptidyl-tRNA hydrolase from Mycobacterium tuberculosis

Selvaraj, M., Roy, S., Singh, N.S., Sangeetha, R., Varshney, U., Vijayan, M.

(2007) J Mol Biology 372: 186-193

Released	2007-07-24
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Peptidyl-tRNA hydrolase (protein)

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2Z2J \| pdb_00002z2j	Download File View File

Crystal structure of Peptidyl-tRNA hydrolase from Mycobacterium tuberculosis

Selvaraj, M., Roy, S., Singh, N.S., Sangeetha, R., Varshney, U., Vijayan, M.

(2007) J Mol Biology 372: 186-193

Released	2007-07-24
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Peptidyl-tRNA hydrolase (protein)

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2Z2K \| pdb_00002z2k	Download File View File

Crystal structure of Peptidyl-tRNA hydrolase from Mycobacterium tuberculosis

Selvaraj, M., Roy, S., Singh, N.S., Sangeetha, R., Varshney, U., Vijayan, M.

(2007) J Mol Biology 372: 186-193

Released	2007-07-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Peptidyl-tRNA hydrolase (protein)
Unique Ligands	CL

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2ZHX \| pdb_00002zhx	Download File View File

Crystal structure of Uracil-DNA Glycosylase from Mycobacterium tuberculosis in complex with a proteinaceous inhibitor

Kaushal, P.S., Talawar, R.K., Krishna, P.D.V., Varshney, U., Vijayan, M.

(2008) Acta Crystallogr D Biol Crystallogr 64: 551-560

Released	2008-05-20
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Bacillus phage PBS2 Mycobacterium tuberculosis H37Rv
Macromolecule	Uracil-DNA glycosylase (protein) Uracil-DNA glycosylase inhibitor (protein)

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3A5U \| pdb_00003a5u	Download File View File

Promiscuity and specificity in DNA binding to SSB: Insights from the structure of the Mycobacterium smegmatis SSB-ssDNA complex

Kaushal, P.S., Manjunath, G.P., Sekar, K., Muniyappa, K., Vijayan, M.

(2009) To be published

Released	2010-08-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Single-stranded DNA-binding protein (protein) DNA (31-MER) (nucleic acid)

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3A7N \| pdb_00003a7n	Download File View File

Crystal structure of uracil-DNA glycosylase from Mycobacterium tuberculosis

Kaushal, P.S., Talawar, R.K., Varshney, U., Vijayan, M.

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 887-892

Released	2010-08-11
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Uracil-DNA glycosylase (protein)
Unique Ligands	FLC

1 to 25 of 120 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DGO | pdb_00001dgo

1EUI | pdb_00001eui

1I9G | pdb_00001i9g

1IDX | pdb_00001idx

1II1 | pdb_00001ii1

1LQG | pdb_00001lqg

1LQJ | pdb_00001lqj

1LQM | pdb_00001lqm

1QE7 | pdb_00001qe7

1UE1 | pdb_00001ue1

1UE5 | pdb_00001ue5

1UE6 | pdb_00001ue6

1UE7 | pdb_00001ue7

1WQF | pdb_00001wqf

1WQG | pdb_00001wqg

1WQH | pdb_00001wqh

1X3E | pdb_00001x3e

1X3F | pdb_00001x3f

1X3G | pdb_00001x3g

2Z2I | pdb_00002z2i

2Z2J | pdb_00002z2j

2Z2K | pdb_00002z2k

2ZHX | pdb_00002zhx

3A5U | pdb_00003a5u

3A7N | pdb_00003a7n