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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Srivastava, S."

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Search Summary

This query matches 78 Structures.

Refinements

Structure Determination Methodology

experimental (78)

Scientific Name of Source Organism

	Bos taurus (32)
	Trematomus bernacchii (10)
	Homo sapiens (9)
	Trematomus newnesi (7)
	Saccharolobus solfataricus (4)
	Danio rerio (3)
	Lithobates pipiens (3)
	synthetic construct (3)
	Eleginops maclovinus (2)
	Salmo salar (2)

More...

Taxonomy

	Eukaryota (69)
	Archaea (4)
	other sequences (3)
	Duplodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (78)

Polymer Entity Type

	Protein (77)
	DNA (6)
	NA-hybrid (1)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (16)
	1.5 - 2.0 (26)
	2.0 - 2.5 (24)
	2.5 - 3.0 (9)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (7)
	2000 - 2004 (29)
	2005 - 2009 (18)
	2010 - 2014 (16)
	2015 - 2019 (5)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (42)
	Lyases (34)
	Oxidoreductases (4)

Symmetry Type

	Asymmetric (34)
	Cyclic (40)
	Dihedral (8)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (42)
	All alpha proteins (20)
	Designed proteins (4)
	Artifacts (1)
	All beta proteins (5)
	Alpha and beta proteins (a/b) (4)

AllSelected

1 to 25 of 78 Structures

Page 1 of 4

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11BA \| pdb_000011ba	Download File View File

BINDING OF A SUBSTRATE ANALOGUE TO A DOMAIN SWAPPING PROTEIN IN THE COMPLEX OF BOVINE SEMINAL RIBONUCLEASE WITH URIDYLYL-2',5'-ADENOSINE

Vitagliano, L., Adinolfi, S., Riccio, A., Sica, F., Zagari, A., Mazzarella, L.

(1998) Protein Sci 7: 1691-1699

Released	1999-03-26
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (RIBONUCLEASE, SEMINAL) (protein)
Unique Ligands	SO4, UPA

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11BG \| pdb_000011bg	Download File View File

A POTENTIAL ALLOSTERIC SUBSITE GENERATED BY DOMAIN SWAPPING IN BOVINE SEMINAL RIBONUCLEASE

Vitagliano, L., Adinolfi, S., Sica, F., Merlino, A., Zagari, A., Mazzarella, L.

(1999) J Mol Biology 293: 569-577

Released	1999-11-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (BOVINE SEMINAL RIBONUCLEASE) (protein)
Unique Ligands	SO4, U2G

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1A2W \| pdb_00001a2w	Download File View File

CRYSTAL STRUCTURE OF A 3D DOMAIN-SWAPPED DIMER OF BOVINE PANCREATIC RIBONUCLEASE A

Liu, Y., Hart, P.J., Schlunegger, M.P., Eisenberg, D.S.

(1998) Proc Natl Acad Sci U S A 95: 3437-3442

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)
Unique Ligands	CL, SO4

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1A3I \| pdb_00001a3i	Download File View File

X-RAY CRYSTALLOGRAPHIC DETERMINATION OF A COLLAGEN-LIKE PEPTIDE WITH THE REPEATING SEQUENCE (PRO-PRO-GLY)

Kramer, R.Z., Vitagliano, L., Bella, J., Berisio, R., Mazzarella, L., Brodsky, B., Zagari, A., Berman, H.M.

(1998) J Mol Biology 280: 623-638

Released	1998-05-06
Method	X-RAY DIFFRACTION 1.97 Å
Macromolecule	COLLAGEN-LIKE PEPTIDE (protein)
Unique Ligands	ACY

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1A3J \| pdb_00001a3j	Download File View File

X-RAY CRYSTALLOGRAPHIC DETERMINATION OF A COLLAGEN-LIKE PEPTIDE WITH THE REPEATING SEQUENCE (PRO-PRO-GLY)

Kramer, R.Z., Vitagliano, L., Bella, J., Berisio, R., Mazzarella, L., Brodsky, B., Zagari, A., Berman, H.M.

(1998) J Mol Biology 280: 623-638

Released	1998-05-06
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	COLLAGEN-LIKE PEPTIDE (protein)

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1BSR \| pdb_00001bsr	Download File View File

BOVINE SEMINAL RIBONUCLEASE STRUCTURE AT 1.9 ANGSTROMS RESOLUTION

Mazzarella, L.

(1993) Acta Crystallogr D Biol Crystallogr 49: 389-402

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	BOVINE SEMINAL RIBONUCLEASE (protein)
Unique Ligands	SO4

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1DY5 \| pdb_00001dy5	Download File View File

Deamidated derivative of bovine pancreatic ribonuclease

Esposito, L., Vitagliano, L., Sica, F., Zagari, A., Mazzarella, L.

(2000) J Mol Biology 297: 713

Released	2000-03-28
Method	X-RAY DIFFRACTION 0.87 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)
Unique Ligands	ACT, IPA, SO4

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1EOS \| pdb_00001eos	Download File View File

CRYSTAL STRUCTURE OF RIBONUCLEASE A COMPLEXED WITH URIDYLYL(2',5')GUANOSINE (PRODUCTIVE BINDING)

Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L.

(2000) Protein Sci 9: 1217-1225

Released	2000-08-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE PANCREATIC (protein)
Unique Ligands	U2G

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1EOW \| pdb_00001eow	Download File View File

CRYSTAL STRUCTURE OF RIBONUCLEASE A COMPLEXED WITH URIDYLYL(2',5')GUANOSINE (NON-PRODUCTIVE BINDING)

Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L.

(2000) Protein Sci 9: 1217-1225

Released	2000-11-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE PANCREATIC (protein)
Unique Ligands	SO4, U2G

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1G9W \| pdb_00001g9w	Download File View File

STRUCTURAL BASIS OF COLLAGEN STABILIZATION INDUCED BY PROLINE HYDROXYLATION

Vitagliano, L., Berisio, R., Mazzarella, L., Zagari, A.

(2001) Biopolymers 58: 459-464

Released	2001-04-18
Method	X-RAY DIFFRACTION 1.3 Å
Macromolecule	COLLAGEN-LIKE PEPTIDE (protein)

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1JVB \| pdb_00001jvb	Download File View File

ALCOHOL DEHYDROGENASE FROM THE ARCHAEON SULFOLOBUS SOLFATARICUS

Esposito, L., Sica, F., Zagari, A., Mazzarella, L.

(2002) J Mol Biology 318: 463-477

Released	2002-08-29
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Saccharolobus solfataricus
Macromolecule	NAD(H)-DEPENDENT ALCOHOL DEHYDROGENASE (protein)
Unique Ligands	ZN

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1JVT \| pdb_00001jvt	Download File View File

CRYSTAL STRUCTURE OF RIBONUCLEASE A (LIGAND-FREE FORM)

Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L.

(2002) Proteins 46: 97-104

Released	2002-06-05
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)

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1JVU \| pdb_00001jvu	Download File View File

CRYSTAL STRUCTURE OF RIBONUCLEASE A (COMPLEXED FORM)

Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L.

(2002) Proteins 46: 97-104

Released	2002-06-05
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)
Unique Ligands	C2P

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1JVV \| pdb_00001jvv	Download File View File

CRYSTAL STRUCTURE OF RIBONUCLEASE A (RETRO-SOAKED FORM)

Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L.

(2002) Proteins 46: 97-104

Released	2002-06-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)

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1K6F \| pdb_00001k6f	Download File View File

Crystal Structure of the Collagen Triple Helix Model [(Pro-Pro-Gly)10]3

Berisio, R., Vitagliano, L., Mazzarella, L., Zagari, A.

(2002) Protein Sci 11: 262-270

Released	2002-01-30
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Saimiriine herpesvirus 2
Macromolecule	collagen triple helix (protein)

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1KF2 \| pdb_00001kf2	Download File View File

Atomic Resolution Structure of RNase A at pH 5.2

Berisio, R., Sica, F., Lamzin, V.S., Wilson, K.S., Zagari, A., Mazzarella, L.

(2002) Acta Crystallogr D Biol Crystallogr 58: 441-450

Released	2001-12-19
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Bos taurus
Macromolecule	pancreatic ribonuclease (protein)
Unique Ligands	SO4

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1KF3 \| pdb_00001kf3	Download File View File

Atomic Resolution Structure of RNase A at pH 5.9

Berisio, R., Sica, F., Lamzin, V.S., Wilson, K.S., Zagari, A., Mazzarella, L.

(2002) Acta Crystallogr D Biol Crystallogr 58: 441-450

Released	2001-12-19
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Bos taurus
Macromolecule	pancreatic ribonuclease (protein)
Unique Ligands	SO4

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1KF4 \| pdb_00001kf4	Download File View File

Atomic Resolution Structure of RNase A at pH 6.3

Berisio, R., Sica, F., Lamzin, V.S., Wilson, K.S., Zagari, A., Mazzarella, L.

(2002) Acta Crystallogr D Biol Crystallogr 58: 441-450

Released	2001-12-19
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Bos taurus
Macromolecule	pancreatic ribonuclease (protein)
Unique Ligands	SO4

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1KF5 \| pdb_00001kf5	Download File View File

Atomic Resolution Structure of RNase A at pH 7.1

Berisio, R., Sica, F., Lamzin, V.S., Wilson, K.S., Zagari, A., Mazzarella, L.

(2002) Acta Crystallogr D Biol Crystallogr 58: 441-450

Released	2001-12-19
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Bos taurus
Macromolecule	pancreatic ribonuclease (protein)

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1KF7 \| pdb_00001kf7	Download File View File

Atomic Resolution Structure of RNase A at pH 8.0

Berisio, R., Sica, F., Lamzin, V.S., Wilson, K.S., Zagari, A., Mazzarella, L.

(2002) Acta Crystallogr D Biol Crystallogr 58: 441-450

Released	2001-12-19
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Bos taurus
Macromolecule	pancreatic ribonuclease (protein)

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1KF8 \| pdb_00001kf8	Download File View File

Atomic resolution structure of RNase A at pH 8.8

Berisio, R., Sica, F., Lamzin, V.S., Wilson, K.S., Zagari, A., Mazzarella, L.

(2002) Acta Crystallogr D Biol Crystallogr 58: 441-450

Released	2001-12-19
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Bos taurus
Macromolecule	pancreatic ribonuclease (protein)

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1LA6 \| pdb_00001la6	Download File View File

The crystal structure of Trematomus newnesi hemoglobin in a partial hemichrome state

Riccio, A., Vitagliano, L., di Prisco, G., Zagari, A., Mazzarella, L.

(2002) Proc Natl Acad Sci U S A 99: 9801-9806

Released	2002-07-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trematomus newnesi
Macromolecule	Hemoglobin alpha-1 chain (protein) Hemoglobin beta-1/2 chain (protein)
Unique Ligands	CMO, HEM