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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kim, S.K."

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Search Summary

This query matches 86 Structures.

Refinements

Structure Determination Methodology

experimental (86)

Scientific Name of Source Organism

	Homo sapiens (25)
	synthetic construct (22)
	Bartonella henselae (15)
	Vibrio cholerae (8)
	Mycolicibacterium smegmatis MC2 155 (5)
	Brucella melitensis (4)
	Mus musculus (4)
	Yersinia pestis (3)
	Danio rerio (2)
	Mycobacterium tuberculosis H37Rv (2)

More...

Taxonomy

	Bacteria (45)
	Eukaryota (38)
	other sequences (22)
	Duplodnaviria (2)
	Eukaryota (eukaryotes) (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (64)
	ELECTRON MICROSCOPY (13)
	ELECTRON CRYSTALLOGRAPHY (8)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (86)
	RNA (24)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (32)
	2.0 - 2.5 (23)
	2.5 - 3.0 (14)
	3.0 - 3.5 (7)
	3.5 - 4.0 (2)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (2)
	2005 - 2009 (20)
	2010 - 2014 (6)
	2015 - 2019 (28)
	2020 - 2024 (29)

Enzyme Classification Name

	Hydrolases (21)
	Transferases (23)
	Ligases (13)
	Isomerases (3)
	Lyases (3)
	Oxidoreductases (2)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (46)
	Cyclic (25)
	Dihedral (21)

SCOP Classification

	Alpha and beta proteins (a+b) (22)
	Artifacts (6)
	Small proteins (5)
	Alpha and beta proteins (a/b) (5)
	All alpha proteins (2)
	All beta proteins (4)
	Peptides (1)

AllSelected

1 to 25 of 86 Structures

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1P1P \| pdb_00001p1p	Download File View File

[PRO7,13] AA-CONOTOXIN PIVA, NMR, 12 STRUCTURES

Han, K.-H., Hwang, K.-J., Kim, S.-M., Kim, S.-K., Gray, W.R., Olivera, B.M., Rivier, J., Shon, K.J.

(1997) Biochemistry 36: 1669-1677

Released	1997-07-07
Method	SOLUTION NMR
Organisms	Conus purpurascens
Macromolecule	AA-CONOTOXIN PIVA (protein)

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1UKH \| pdb_00001ukh	Download File View File

Structural basis for the selective inhibition of JNK1 by the scaffolding protein JIP1 and SP600125

Heo, Y.-S., Kim, Y.K., Sung, B.-J., Lee, H.S., Lee, J.I., Seo, C.I., Park, S.-Y., Kim, J.H., Hyun, Y.-L., Jeon, Y.H., Ro, S., Lee, T.G., Cho, J.M., Hwang, K.Y., Yang, C.-H.

(2004) EMBO J 23: 2185-2195

Released	2004-08-30
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	11-mer peptide from C-jun-amino-terminal kinase interacting protein 1 (protein) Mitogen-activated protein kinase 8 isoform 4 (protein)

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1UKI \| pdb_00001uki	Download File View File

Structural basis for the selective inhibition of JNK1 by the scaffolding protein JIP1 and SP600125

Heo, Y.-S., Kim, Y.K., Sung, B.-J., Lee, H.S., Lee, J.I., Seo, C.I., Park, S.-Y., Kim, J.H., Hyun, Y.-L., Jeon, Y.H., Ro, S., Lee, T.G., Cho, J.M., Hwang, K.Y., Yang, C.-H.

(2004) EMBO J 23: 2185-2195

Released	2004-08-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	11-mer peptide from C-jun-amino-terminal kinase interacting protein 1 (protein) mitogen-activated protein kinase 8 isoform 4 (protein)
Unique Ligands	537

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1Y6L \| pdb_00001y6l	Download File View File

Human ubiquitin conjugating enzyme E2E2

Walker, J.R., Avvakumov, G.V., Newman, E.M., Mackenzie, F., Kozieradzki, I., Bochkarev, A., Sundstrom, M., Arrowsmith, C., Edwards, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-01-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2E2 (protein)

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1YH2 \| pdb_00001yh2	Download File View File

Ubiquitin-Conjugating Enzyme HSPC150

Walker, J.R., Avvakumov, G.V., Newman, E.M., Mackenzie, F., Kozieradzki, I., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-02-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	HSPC150 protein similar to ubiquitin-conjugating enzyme (protein)

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1YRV \| pdb_00001yrv	Download File View File

Novel Ubiquitin-Conjugating Enzyme

Walker, J.R., Choe, J., Avvakumov, G.V., Newman, E.M., MacKenzie, F., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Homo sapiens
Macromolecule	ubiquitin-conjugating ligase MGC351130 (protein)

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1ZDN \| pdb_00001zdn	Download File View File

Ubiquitin-conjugating enzyme E2S

Walker, J.R., Avvakumov, G.V., Xue, S., Newman, E.M., Mackenzie, F., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-05-03
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2S (protein)
Unique Ligands	NA

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1ZUO \| pdb_00001zuo	Download File View File

Structure of Human Ubiquitin-Conjugating Enzyme (UBCi) Involved in Embryo Attachment and Implantation

Walker, J.R., Avvakumov, G.V., Cui, H., Newman, E.M., Mackenzie, F., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-07-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Hypothetical protein LOC92912 (protein)
Unique Ligands	BME

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2A4D \| pdb_00002a4d	Download File View File

Structure of the human ubiquitin-conjugating enzyme E2 variant 1 (UEV-1)

Walker, J.R., Avvakumov, G.V., Xue, S., Newman, E.M., Mackenzie, F., Weigelt, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-07-12
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2 variant 1 (protein)

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2A7L \| pdb_00002a7l	Download File View File

Structure of the human hypothetical ubiquitin-conjugating enzyme, LOC55284

Walker, J.R., Avvakumov, G.V., Xue, S., Newman, E.M., Mackenzie, F., Weigelt, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-09-06
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Hypothetical ubiquitin-conjugating enzyme LOC55284 (protein)
Unique Ligands	NA

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2AKJ \| pdb_00002akj	Download File View File

Structure of spinach nitrite reductase

Swamy, U., Wang, M., Tripathy, J.N., Kim, S.-K., Hirasawa, M., Knaff, D.B., Allen, J.P.

(2005) Biochemistry 44: 16054-16063

Released	2006-01-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Spinacia oleracea
Macromolecule	Ferredoxin--nitrite reductase, chloroplast (protein)
Unique Ligands	SF4, SRM

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2AWF \| pdb_00002awf	Download File View File

Structure of human Ubiquitin-conjugating enzyme E2 G1

Walker, J.R., Avvakumov, G.V., Xue, S., Newman, E.M., Finerty, P., Mackenzie, F., Weigelt, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2 G1 (protein)

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2E7P \| pdb_00002e7p	Download File View File

Crystal structure of the holo form of glutaredoxin C1 from populus tremula x tremuloides

Unno, H., Takahashi, T., Kawakami, T., Aimoto, S., Hase, T., Kusunoki, M., Rouhier, N., Jacquot, J.P.

(2007) Proc Natl Acad Sci U S A 104: 7379-7384

Released	2007-09-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Populus tremula x Populus tremuloides
Macromolecule	Glutaredoxin (protein)
Unique Ligands	FES, GSH

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2F4W \| pdb_00002f4w	Download File View File

Human ubiquitin-conjugating enzyme E2 J2

Walker, J.R., Avvakumov, G.V., Xue, S., Finerty Jr., P.J., Newman, E.M., Mackenzie, F., Weigelt, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2005-12-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ubiquitin-conjugating enzyme E2, J2 (protein)

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2F6L \| pdb_00002f6l	Download File View File

X-ray structure of Chorismate Mutase from Mycobacterium Tuberculosis

Kim, S.K., Howard, A.J., Gilliland, G.L., Reddy, P.T., Ladner, J.E.

(2006) J Bacteriol 188: 8638-8648

Released	2005-12-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Chorismate mutase (protein)

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2GBB \| pdb_00002gbb	Download File View File

Crystal structure of secreted chorismate mutase from Yersinia pestis

Ladner, J.E., Reddy, P.T., Nelson, B.C., Robinson, H., Kim, S.-K.

(2008) FEBS J 275: 4824-4835

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Yersinia pestis biovar Microtus str. 91001
Macromolecule	putative chorismate mutase (protein)
Unique Ligands	CIT, SO4

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2OB4 \| pdb_00002ob4	Download File View File

Human Ubiquitin-Conjugating Enzyme CDC34

Neculai, D., Avvakumov, G.V., Xue, S., Walker, J.R., Mackenzie, F., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Sicheri, F., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2006-12-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2-32 kDa complementing (protein)

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2QBV \| pdb_00002qbv	Download File View File

Crystal Structure of Intracellular Chorismate Mutase from Mycobacterium Tuberculosis

Ladner, J.E., Reddy, P.T., Kim, S.K., Reddy, S.-K., Nelson, B.C.

(2008) FEBS J 275: 4824-4835

Released	2007-06-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	CHORISMATE MUTASE (protein)

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2QGX \| pdb_00002qgx	Download File View File

Ubiquitin-conjugating enzyme E2Q

(2012) Mol Cell Proteomics 11: 329-341

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2 Q1 (protein)

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2QI2 \| pdb_00002qi2	Download File View File

Crystal structure of the Thermoplasma acidophilum Pelota protein

Lee, H.H., Kim, Y.S., Kim, K.H., Heo, I.H., Kim, S.K., Kim, O., Suh, S.W.

(2007) Mol Cell 27: 938-950

Released	2007-10-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Cell division protein pelota related protein (protein)

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2Z5D \| pdb_00002z5d	Download File View File

Human ubiquitin-conjugating enzyme E2 H

Bochkarev, A., Cui, H., Walker, J.R., Newman, E.M., Mackenzie, F., Battaile, K.P., Sundstrom, M., Arrowsmith, C., Edwards, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2012) Mol Cell Proteomics 11: 329-341

Released	2007-10-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2 H (protein)
Unique Ligands	NA

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3B1F \| pdb_00003b1f	Download File View File

Crystal structure of prephenate dehydrogenase from Streptococcus mutans

Ku, H.K., Do, N.H., Song, J.S., Choi, S., Shin, M.H., Kim, K.J., Lee, S.J.

(2011) Int J Biol Macromol 49: 761-766

Released	2011-10-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptococcus mutans
Macromolecule	Putative prephenate dehydrogenase (protein)
Unique Ligands	NAD