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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Jia, Q."

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Search Summary

This query matches 74 Structures.

Refinements

Structure Determination Methodology

experimental (74)

Scientific Name of Source Organism

	Homo sapiens (30)
	Oryctolagus cuniculus (9)
	Mycolicibacterium smegmatis MC2 155 (8)
	African swine fever virus (6)
	Geobacter metallireducens GS-15 (4)
	synthetic construct (4)
	Pseudomonas aeruginosa PAO1 (3)
	Streptomyces chartreusis NRRL 3882 (3)
	Escherichia coli (2)
	Escherichia coli K-12 (2)

More...

Taxonomy

	Eukaryota (36)
	Bacteria (31)
	Varidnaviria (6)
	Riboviria (5)
	other sequences (4)

Experimental Method

	X-RAY DIFFRACTION (49)
	ELECTRON MICROSCOPY (25)

Polymer Entity Type

	Protein (74)
	DNA (6)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (24)
	2.0 - 2.5 (18)
	2.5 - 3.0 (9)
	3.0 - 3.5 (8)
	3.5 - 4.0 (6)
	> 4.5 (5)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (2)
	2005 - 2009 (12)
	2010 - 2014 (9)
	2015 - 2019 (16)
	2020 - 2024 (27)
	2025 - 2029 (7)

Enzyme Classification Name

	Lyases (15)
	Hydrolases (18)
	Transferases (14)
	Ligases (3)
	Isomerases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (58)
	Cyclic (11)
	Helical (4)
	Dihedral (1)

SCOP Classification

	All beta proteins (18)
	Alpha and beta proteins (a/b) (3)
	All alpha proteins (1)
	Coiled coil proteins (2)

AllSelected

1 to 25 of 74 Structures

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Explore in 3D

1AK4 \| pdb_00001ak4	Download File View File

HUMAN CYCLOPHILIN A BOUND TO THE AMINO-TERMINAL DOMAIN OF HIV-1 CAPSID

Hill, C.P., Gamble, T.R., Vajdos, F.F., Worthylake, D.K., Sundquist, W.I.

(1996) Cell 87: 1285-1294

Released	1997-10-15
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	CYCLOPHILIN A (protein) HIV-1 CAPSID (protein)

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1KFM \| pdb_00001kfm	Download File View File

Core side-chain packing and backbone conformation in Lpp-56 coiled-coil mutants

Liu, J., Cao, W., Lu, M.

(2002) J Mol Biology 318: 877-888

Released	2002-06-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	MAJOR OUTER MEMBRANE LIPOPROTEIN (protein)

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1KFN \| pdb_00001kfn	Download File View File

Core side-chain packing and backbone conformation in Lpp-56 coiled-coil mutants

Liu, J., Cao, W., Lu, M.

(2002) J Mol Biology 318: 877-888

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	MAJOR OUTER MEMBRANE LIPOPROTEIN (protein)

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2W35 \| pdb_00002w35	Download File View File

Structures of endonuclease V with DNA reveal initiation of deaminated adenine repair

Dalhus, B., Arvai, A.S., Rosnes, I., Olsen, O.E., Backe, P.H., Alseth, I., Gao, H., Cao, W., Tainer, J.A., Bjoras, M.

(2009) Nat Struct Mol Biol 16: 138

Released	2009-01-20
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Thermotoga maritima synthetic construct
Macromolecule	Endonuclease V (protein) 5'-D(APGPCPCPGPTP)-3' (nucleic acid) 5'-D(APTPGPCPGPAPCPIP*GP)-3' (nucleic acid)
Unique Ligands	MG

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2W36 \| pdb_00002w36	Download File View File

Structures of endonuclease V with DNA reveal initiation of deaminated adenine repair

Dalhus, B., Arvai, A.S., Rosnes, I., Olsen, O.E., Backe, P.H., Alseth, I., Gao, H., Cao, W., Tainer, J.A., Bjoras, M.

(2009) Nat Struct Mol Biol 16: 138

Released	2009-01-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermotoga maritima synthetic construct
Macromolecule	ENDONUCLEASE V (protein) 5'-D(CPGPAPTPCPTPGPTPAPGPCP)-3' (nucleic acid) 5'-D(GPCPBRUPAPCPIPGPAPBRUPCPGP)-3' (nucleic acid)

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3D8W \| pdb_00003d8w	Download File View File

Use of a carbonic Anhydrase II, IX Active-site Mimic, for the Purpose of Screening Inhibitors for Possible Anti-Cancer Properties

Genis, C., Sippel, K.H., Case, N., Govindasamy, L., Agbandje-Mckenna, M., Mckenna, R.

(2009) Biochemistry 48: 1322-1331

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase II (protein)
Unique Ligands	D8W, ZN

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3D9Z \| pdb_00003d9z	Download File View File

Use of Carbonic Anhydrase II, IX Active-Site Mimic, for the Purpose of Screening Inhibitors for Possible Anti-Cancer Properties

Genis, C., Sippel, K.H., Case, N., Govindasamy, L., Agbandje-Mckenna, M., Mckenna, R.

(2009) Biochemistry 48: 1322-1331

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	D9Z, ZN

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3DAZ \| pdb_00003daz	Download File View File

Use of Carbonic Anhydrase II, IX Active-Site Mimic, for the Purpose of Screening Inhibitors for Possible Anti-Cancer Properties

Genis, C., Sippel, K.H., Case, N., Govindasamy, L., Agbandje-Mckenna, M., Mckenna, R.

(2009) Biochemistry 48: 1322-1331

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	MZM, ZN

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3DBU \| pdb_00003dbu	Download File View File

Use of Carbonic Anhydrase II, IX Active-Site Mimic, for the Purpose of Screening Inhibitors for Possible Anti-Cancer Properties

Genis, C., Sippel, K.H., Case, N., Govindasamy, L., Agbandje-Mckenna, M., Mckenna, R.

(2009) Biochemistry 48: 1322-1331

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	D8W, ZN

Explore in 3D

3DC3 \| pdb_00003dc3	Download File View File

Use of Carbonic Anhydrase II, IX Active-Site Mimic, for the Purpose of Screening Inhibitors for Possible Anti-Cancer Properties

Genis, C., Sippel, K.H., Case, N., Govindasamy, L., Agbandje-Mckenna, M., Mckenna, R.

(2009) Biochemistry 48: 1322-1331

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	AZM, ZN

Explore in 3D

3DC9 \| pdb_00003dc9	Download File View File

Use of Carbonic Anhydrase II, IX Active-Site Mimic, for the Purpose of Screening Inhibitors for Possible Anti-Cancer Properties

Genis, C., Sippel, K.H., Case, N., Govindasamy, L., Agbandje-Mckenna, M., Mckenna, R.

(2009) Biochemistry 48: 1322-1331

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	ZN

Explore in 3D

3DCC \| pdb_00003dcc	Download File View File

Use of Carbonic Anhydrase II, IX Active-Site Mimic, for the Purpose of Screening Inhibitors for Possible Anti-Cancer Properties

Genis, C., Sippel, K.H., Case, N., Govindasamy, L., Agbandje-Mckenna, M., Mckenna, R.

(2009) Biochemistry 48: 1322-1331

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	D9Z, ZN

Explore in 3D

3DCS \| pdb_00003dcs	Download File View File

Use of Carbonic Anhydrase II, IX Active-Site Mimic, for the Purpose of Screening Inhibitors for Possible Anti-Cancer Properties

Genis, C., Sippel, K.H., Case, N., Govindasamy, L., Agbandje-Mckenna, M., Mckenna, R.

(2009) Biochemistry 48: 1322-1331

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	MZM, ZN

Explore in 3D

3DCW \| pdb_00003dcw	Download File View File

Use of Carbonic Anhydrase II, IX Active-Site Mimic, for the Purpose of Screening Inhibitors for Possible Anti-Cancer Properties

Genis, C., Sippel, K.H., Case, N., Govindasamy, L., Agbandje-Mckenna, M., Mckenna, R.

(2009) Biochemistry 48: 1322-1331

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	EZL, ZN

Explore in 3D

3DD0 \| pdb_00003dd0	Download File View File

Use of Carbonic Anhydrase II, IX Active-Site Mimic, for the Purpose of Screening Inhibitors for Possible Anti-Cancer Properties

Genis, C., Sippel, K.H., Case, N., Govindasamy, L., Agbandje-Mckenna, M., Mckenna, R.

(2009) Biochemistry 48: 1322-1331

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	EZL, ZN

Explore in 3D

3OIK \| pdb_00003oik	Download File View File

Human Carbonic anhydrase II mutant A65S, N67Q (CA IX mimic) bound by 2-Ethylestradiol 3,17-O,O-bis-sulfamate

Sippel, K.H., Stander, B.A., Robbins, A.H., Tu, C.K., Agbandje-McKenna, M., Silverman, D.N., Joubert, A.M., McKenna, R.

(2011) Lett Drug Des Discov 8:

Released	2011-07-06
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	GOL, WZB, ZN

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3OIL \| pdb_00003oil	Download File View File

Human Carbonic anhydrase II mutant A65S, N67Q (CA IX mimic) bound by 2-Ethylestradiol 3-O-sulfamate

Sippel, K.H., Stander, B.A., Robbins, A.H., Tu, C.K., Agbandje-McKenna, M., Silverman, D.N., Joubert, A.M., McKenna, R.

(2011) Lett Drug Des Discov 8:

Released	2011-07-06
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	VZ5, ZN

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3OIM \| pdb_00003oim	Download File View File

Human Carbonic anhydrase II bound by 2-Ethylestradiol 3-O-sulfamate

Sippel, K.H., Stander, B.A., Robbins, A.H., Tu, C.K., Agbandje-McKenna, M., Silverman, D.N., Joubert, A.M., McKenna, R.

(2011) Lett Drug Des Discov 8:

Released	2011-07-06
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	DMS, GOL, VZ5, ZN

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3OKU \| pdb_00003oku	Download File View File

Human Carbonic Anhydrase II in complex with 2-Ethylestrone-3-O-sulfamate

Sippel, K.H., Stander, B.A., Robbins, A.H., Tu, C.K., Agbandje-McKenna, M., Silverman, D.N., Joubert, A.M., McKenna, R.

(2011) Lett Drug Des Discov 8:

Released	2011-07-06
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	DMS, GOL, VZ4, ZN

Explore in 3D

3OKV \| pdb_00003okv	Download File View File

Human Carbonic Anhydrase II A65S, N67Q (CA IX mimic) bound with 2-Ethylestrone 3-O-sulfamate

Sippel, K.H., Stander, B.A., Robbins, A.H., Tu, C.K., Agbandje-McKenna, M., Silverman, D.N., Joubert, A.M., McKenna, R.

(2011) Lett Drug Des Discov 8:

Released	2011-07-06
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	DMS, VZ4, ZN

Explore in 3D

4CSU \| pdb_00004csu	Download File View File

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Feng, B., Mandava, C.S., Guo, Q., Wang, J., Cao, W., Li, N., Zhang, Y., Zhang, Y., Wang, Z., Wu, J., Sanyal, S., Lei, J., Gao, N.

(2014) PLoS Biol 12: 1866

Released	2014-06-04
Method	ELECTRON MICROSCOPY 5.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 31 Unique nucleic acid chains: 2

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4GLR \| pdb_00004glr	Download File View File

Structure of the anti-ptau Fab (pT231/pS235_1) in complex with phosphoepitope pT231/pS235

Tu, C., Mosyak, L., Bard, J.

(2012) J Biological Chem 287: 44425-44434

Released	2012-11-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gallus gallus Homo sapiens
Macromolecule	anti-ptau heavy chain (protein) anti-ptau light chain (protein) phospho-peptide (protein)
Unique Ligands	PO4

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4LQY \| pdb_00004lqy	Download File View File

Crystal Structure of Human ENPP4 with AMP

Albright, R.A., Braddock, D.T.

(2014) J Biological Chem 289: 3294-3306

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Homo sapiens
Macromolecule	Bis(5'-adenosyl)-triphosphatase ENPP4 (protein)
Unique Ligands	AMP, NAG, ZN
Unique branched monosaccharides	NAG

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4LR2 \| pdb_00004lr2	Download File View File

Crystal Structure of Human ENPP4 (apo)

Albright, R.A., Braddock, D.T.

(2014) J Biological Chem 289: 3294-3306

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Bis(5'-adenosyl)-triphosphatase ENPP4 (protein)
Unique Ligands	FLC, NAG, ZN
Unique branched monosaccharides	NAG

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5ADY \| pdb_00005ady	Download File View File

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Zhang, Y., Mandava, C.S., Cao, W., Li, X., Zhang, D., Li, N., Zhang, Y., Zhang, X., Qin, Y., Mi, K., Lei, J., Sanyal, S., Gao, N.

(2015) Nat Struct Mol Biol 22: 906

Released	2015-10-14
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 32 Unique nucleic acid chains: 2
Unique Ligands	GNP, MG

1 to 25 of 74 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AK4 | pdb_00001ak4

1KFM | pdb_00001kfm

1KFN | pdb_00001kfn

2W35 | pdb_00002w35

2W36 | pdb_00002w36

3D8W | pdb_00003d8w

3D9Z | pdb_00003d9z

3DAZ | pdb_00003daz

3DBU | pdb_00003dbu

3DC3 | pdb_00003dc3

3DC9 | pdb_00003dc9

3DCC | pdb_00003dcc

3DCS | pdb_00003dcs

3DCW | pdb_00003dcw

3DD0 | pdb_00003dd0

3OIK | pdb_00003oik

3OIL | pdb_00003oil

3OIM | pdb_00003oim

3OKU | pdb_00003oku

3OKV | pdb_00003okv

4CSU | pdb_00004csu

4GLR | pdb_00004glr

4LQY | pdb_00004lqy

4LR2 | pdb_00004lr2

5ADY | pdb_00005ady