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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Fujita, N."

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Search Summary

This query matches 25 Structures.

Refinements

Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Crocosphaera subtropica ATCC 51142 (14)
	Homo sapiens (10)
	Mus musculus (5)
	Escherichia coli K-12 (1)

Taxonomy

	Bacteria (15)
	Eukaryota (10)

Experimental Method

	X-RAY DIFFRACTION (17)
	ELECTRON MICROSCOPY (5)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (25)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (6)
	2.5 - 3.0 (3)
	3.0 - 3.5 (3)
	3.5 - 4.0 (4)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (2)
	2010 - 2014 (2)
	2015 - 2019 (13)
	2020 - 2024 (7)

Enzyme Classification Name

	Transferases (18)
	Translocases (5)

Membrane Protein Annotation

	MemProtMD (5)
	OPM (5)
	PDBTM (5)
	mpstruc (5)

Symmetry Type

	Asymmetric (25)
	Cyclic (1)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	All alpha proteins (1)

AllSelected

1 to 25 of 25 Structures

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1COO \| pdb_00001coo	Download File View File

THE COOH-TERMINAL DOMAIN OF RNA POLYMERASE ALPHA SUBUNIT

Jeon, Y.H., Negishi, T., Shirakawa, M., Yamazaki, T., Fujita, N., Ishihama, A., Kyogoku, Y.

(1995) Science 270: 1495-1497

Released	1996-03-08
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	RNA POLYMERASE ALPHA SUBUNIT (protein)

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1D9N \| pdb_00001d9n	Download File View File

SOLUTION STRUCTURE OF THE METHYL-CPG-BINDING DOMAIN OF THE METHYLATION-DEPENDENT TRANSCRIPTIONAL REPRESSOR MBD1/PCM1

Ohki, I., Shimotake, N., Fujita, N., Nakao, M., Shirakawa, M.

(1999) EMBO J 18: 6653-6661

Released	2000-10-28
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	METHYL-CPG-BINDING PROTEIN MBD1 (protein)

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1IG4 \| pdb_00001ig4	Download File View File

Solution Structure of the Methyl-CpG-Binding Domain of Human MBD1 in Complex with Methylated DNA

Ohki, I., Shimotake, N., Fujita, N., Jee, J.-G., Ikegami, T., Nakao, M., Shirakawa, M.

(2001) Cell 105: 487-497

Released	2001-05-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Methyl-CpG Binding Protein (protein) 5'-D(GPTPAPTPCP(5CM)PGPGPAPTPAPC)-3' (nucleic acid)

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3A99 \| pdb_00003a99	Download File View File

Structure of PIM-1 kinase crystallized in the presence of P27KIP1 Carboxy-terminal peptide

Morishita, D., Takami, M., Yoshikawa, S., Katayama, R., Sato, S., Kukimoto-Niino, M., Umehara, T., Shirouzu, M., Sekimizu, K., Yokoyama, S., Fujita, N.

(2011) J Biological Chem 286: 2681-2688

Released	2010-11-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Proto-oncogene serine/threonine-protein kinase pim-1 (protein)
Unique Ligands	ANP, MG

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4MKC \| pdb_00004mkc	Download File View File

Crystal Structure of Anaplastic Lymphoma Kinase Complexed with LDK378

Lee, C.C., Spraggon, G.

(2014) Cancer Discov 4: 662-673

Released	2014-04-09
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	ALK tyrosine kinase receptor (protein)
Unique Ligands	4MK, GOL

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5GQU \| pdb_00005gqu	Download File View File

Crystal structure of branching enzyme from Cyanothece sp. ATCC 51142

Suzuki, R., Suzuki, E.

(2017) J Biological Chem 292: 5465-5475

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Crocosphaera subtropica ATCC 51142
Macromolecule	1,4-alpha-glucan branching enzyme GlgB (protein)
Unique Ligands	GOL, MG

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5GQV \| pdb_00005gqv	Download File View File

Crystal structure of branching enzyme from Cyanothece sp. ATCC 51142 in complex with maltohexaose

Suzuki, R., Suzuki, E.

(2017) J Biological Chem 292: 5465-5475

Released	2017-02-22
Method	X-RAY DIFFRACTION 3 Å
Organisms	Crocosphaera subtropica ATCC 51142
Macromolecule	1,4-alpha-glucan branching enzyme GlgB (protein)
Unique Ligands	GOL, MG
Unique branched monosaccharides	GLC

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5GQW \| pdb_00005gqw	Download File View File

Crystal structure of branching enzyme W610N mutant from Cyanothece sp. ATCC 51142

Suzuki, R., Suzuki, E.

(2017) J Biological Chem 292: 5465-5475

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Crocosphaera subtropica ATCC 51142
Macromolecule	1,4-alpha-glucan branching enzyme GlgB (protein)
Unique Ligands	GOL, MG

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5GQX \| pdb_00005gqx	Download File View File

Crystal structure of branching enzyme W610N mutant from Cyanothece sp. ATCC 51142 in complex with maltoheptaose

Suzuki, R., Suzuki, E.

(2017) J Biological Chem 292: 5465-5475

Released	2017-02-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Crocosphaera subtropica ATCC 51142
Macromolecule	1,4-alpha-glucan branching enzyme GlgB (protein)
Unique Ligands	GOL, MG
Unique branched monosaccharides	GLC

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5GQY \| pdb_00005gqy	Download File View File

Crystal structure of branching enzyme from Cyanothece sp. ATCC 51142 in complex with maltoheptaose

Suzuki, R., Suzuki, E.

To be published

Released	2017-08-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Crocosphaera subtropica ATCC 51142
Macromolecule	1,4-alpha-glucan branching enzyme GlgB (protein)
Unique Ligands	GOL, MG
Unique branched monosaccharides	GLC

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5GQZ \| pdb_00005gqz	Download File View File

Crystal structure of branching enzyme Y500A mutant from Cyanothece sp. ATCC 51142

Suzuki, R., Suzuki, E.

To be published

Released	2017-08-16
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Crocosphaera subtropica ATCC 51142
Macromolecule	1,4-alpha-glucan branching enzyme GlgB (protein)
Unique Ligands	GOL, MG

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5GR0 \| pdb_00005gr0	Download File View File

Crystal structure of branching enzyme D501A mutant from Cyanothece sp. ATCC 51142

Suzuki, R., Suzuki, E.

To be published

Released	2017-08-16
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Crocosphaera subtropica ATCC 51142
Macromolecule	1,4-alpha-glucan branching enzyme GlgB (protein)
Unique Ligands	GOL, MG

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5GR1 \| pdb_00005gr1	Download File View File

Crystal structure of branching enzyme Y500A/D501A mutant from Cyanothece sp. ATCC 51142 in complex with maltoheptaose

Suzuki, R., Suzuki, E.

To be published

Released	2017-08-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Crocosphaera subtropica ATCC 51142
Macromolecule	1,4-alpha-glucan branching enzyme GlgB (protein)
Unique Ligands	GOL, MG
Unique branched monosaccharides	GLC

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5GR2 \| pdb_00005gr2	Download File View File

Crystal structure of branching enzyme L541A mutant from Cyanothece sp. ATCC 51142

Suzuki, R., Suzuki, E.

To be published

Released	2017-08-16
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Crocosphaera subtropica ATCC 51142
Macromolecule	1,4-alpha-glucan branching enzyme GlgB (protein)
Unique Ligands	GOL, MG

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5GR3 \| pdb_00005gr3	Download File View File

Crystal structure of branching enzyme L541A/W655A mutant from Cyanothece sp. ATCC 51142

Suzuki, R., Suzuki, E.

To be published

Released	2017-08-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Crocosphaera subtropica ATCC 51142
Macromolecule	1,4-alpha-glucan branching enzyme GlgB (protein)
Unique Ligands	GOL, MG

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5GR4 \| pdb_00005gr4	Download File View File

Crystal structure of branching enzyme L541A mutant from Cyanothece sp. ATCC 51142 in complex with maltoheptaose

Suzuki, R., Suzuki, E.

To be published

Released	2017-08-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Crocosphaera subtropica ATCC 51142
Macromolecule	1,4-alpha-glucan branching enzyme GlgB (protein)
Unique Ligands	GOL, MG
Unique branched monosaccharides	GLC

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5GR5 \| pdb_00005gr5	Download File View File

Crystal structure of branching enzyme W610A mutant from Cyanothece sp. ATCC 51142

Suzuki, R., Suzuki, E.

To be published

Released	2017-08-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Crocosphaera subtropica ATCC 51142
Macromolecule	1,4-alpha-glucan branching enzyme GlgB (protein)
Unique Ligands	GOL, MG

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5GR6 \| pdb_00005gr6	Download File View File

Crystal structure of branching enzyme Y500A/D501A double mutant from Cyanothece sp. ATCC 51142

Suzuki, R., Suzuki, E.

To be published

Released	2017-08-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Crocosphaera subtropica ATCC 51142
Macromolecule	1,4-alpha-glucan branching enzyme GlgB (protein)
Unique Ligands	GOL, MG

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6KLF \| pdb_00006klf	Download File View File

Crystal structure of branching enzyme D434A mutant from Cyanothece sp. ATCC 51142

Suzuki, R., Suzuki, E.

(2021) Arch Biochem Biophys 702: 108821

Released	2020-08-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Crocosphaera subtropica ATCC 51142
Macromolecule	1,4-alpha-glucan branching enzyme GlgB (protein)
Unique Ligands	GOL, MG

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7A65 \| pdb_00007a65	Download File View File

Nanodisc reconstituted, drug-free human ABCB1 in complex with MRK16 Fab

Nosol, K., Locher, K.P.

(2020) Proc Natl Acad Sci U S A 117: 26245-26253

Released	2020-10-14
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	MRK16 Fab-fragment heavy chain (protein) MRK16 Fab-fragment light chain (protein) Multidrug resistance protein 1 (protein)
Unique Ligands	CLR

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7A69 \| pdb_00007a69	Download File View File

Nanodisc reconstituted human ABCB1 in complex with MRK16 Fab and vincristine

Nosol, K., Locher, K.P.

(2020) Proc Natl Acad Sci U S A 117: 26245-26253

Released	2020-10-21
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	MRK16 Fab-fragment heavy chain (protein) MRK16 Fab-fragment light chain (protein) Multidrug resistance protein 1 (protein)
Unique Ligands	CLR, R1Q

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7A6C \| pdb_00007a6c	Download File View File

Nanodisc reconstituted human ABCB1 in complex with MRK16 Fab and elacridar

Nosol, K., Locher, K.P.

(2020) Proc Natl Acad Sci U S A 117: 26245-26253

Released	2020-10-14
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	If kappa light chain (protein) MRK16 Fab-fragment heavy chain (protein) Multidrug resistance protein 1 (protein)
Unique Ligands	CLR, R0Z

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7A6E \| pdb_00007a6e	Download File View File

Nanodisc reconstituted human ABCB1 in complex with MRK16 Fab and tariquidar

Nosol, K., Locher, K.P.

(2020) Proc Natl Acad Sci U S A 117: 26245-26253

Released	2020-10-14
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	MRK16 Fab-fragment heavy chain (protein) MRK16 Fab-fragment light chain (protein) Multidrug resistance protein 1 (protein)
Unique Ligands	CLR, R1H

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7A6F \| pdb_00007a6f	Download File View File

Nanodisc reconstituted human ABCB1 in complex with MRK16 Fab and zosuquidar

Nosol, K., Locher, K.P.

(2020) Proc Natl Acad Sci U S A 117: 26245-26253

Released	2020-10-14
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	MRK16 Fab-fragment heavy chain (protein) MRK16 Fab-fragment light chain (protein) Multidrug resistance protein 1 (protein)
Unique Ligands	CLR, ZQU