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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Deadman, J.J."

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Search Summary

This query matches 116 Structures.

Refinements

Structure Determination Methodology

experimental (116)

Scientific Name of Source Organism

	Human immunodeficiency virus 1 (79)
	Human immunodeficiency virus (20)
	Homo sapiens (17)
	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE) (13)
	Hirudo medicinalis (4)

Taxonomy

	Riboviria (112)
	Eukaryota (17)

Experimental Method

X-RAY DIFFRACTION (116)

Polymer Entity Type

Protein (116)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (97)
	2.0 - 2.5 (18)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (2)
	2010 - 2014 (112)

Enzyme Classification Name

	Transferases (75)
	Hydrolases (4)

Symmetry Type

	Cyclic (112)
	Asymmetric (4)

SCOP Classification

	Alpha and beta proteins (a/b) (95)
	All beta proteins (4)

AllSelected

1 to 25 of 116 Structures

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1A3B \| pdb_00001a3b	Download File View File

COMPLEX OF HUMAN ALPHA-THROMBIN WITH THE BIFUNCTIONAL BORONATE INHIBITOR BOROLOG1

Skordalakes, E., Elgendy, S., Dodson, G., Goodwin, C.A., Green, D., Scully, M.F., Freyssinet, J.H., Kakkar, V.V., Deadman, J.

(1998) Biochemistry 37: 14420-14427

Released	1998-06-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) Hirudin (protein)
Unique Ligands	T29

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1A3E \| pdb_00001a3e	Download File View File

COMPLEX OF HUMAN ALPHA-THROMBIN WITH THE BIFUNCTIONAL BORONATE INHIBITOR BOROLOG2

Skordalakes, E., Elgendy, S., Goodwin, C.A., Green, D., Scullly, M.F., Kakkar, V.V., Freyssinet, J.M., Dodson, G., Deadman, J.

(1998) Biochemistry 37: 14420-14427

Released	1998-06-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) Hirudin (protein)
Unique Ligands	T16

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1H8D \| pdb_00001h8d	Download File View File

X-ray structure of the human alpha-thrombin complex with a tripeptide phosphonate inhibitor.

Skordalakes, E., Dodson, G.G., Green, D., Deadman, J.

(2001) J Mol Biology 311: 549

Released	2001-02-26
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUDIN I (protein) THROMBIN (protein)
Unique Ligands	PHW

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1H8I \| pdb_00001h8i	Download File View File

X-ray crystal structure of human alpha-thrombin with a tripeptide phosphonate inhibitor.

Skordalakes, E., Dodson, G.G., Green, D., Deadman, J.

(2001) J Mol Biology 311: 549

Released	2001-03-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUDIN I (protein) THROMBIN (protein)
Unique Ligands	PHV

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3AO1 \| pdb_00003ao1	Download File View File

Fragment-based approach to the design of ligands targeting a novel site in HIV-1 integrase

Wielens, J., Parker, M.W., Chalmers, D.K., Scanlon, M.J.

(2011) ChemMedChem 6: 258-261

Released	2011-03-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein)
Unique Ligands	BZX, CD, SO4

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3AO2 \| pdb_00003ao2	Download File View File

Fragment-based approach to the design of ligands targeting a novel site on HIV-1 integrase

Wielens, J., Chalmers, D.K., Headey, S.J., Parker, M.W., Scanlon, M.J.

(2011) ChemMedChem 6: 258-261

Released	2011-03-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein)
Unique Ligands	AVX, CD, CL, DTT, DTV, MG, SO4

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3AO3 \| pdb_00003ao3	Download File View File

Fragment-based approach to the design of ligands targeting a novel site on HIV-1 integrase

Wielens, J., Headey, S.J., Parker, M.W., Chalmers, D.K., Scanlon, M.J.

(2011) ChemMedChem 6: 258-261

Released	2011-03-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein)
Unique Ligands	BMC, CD, CL, SO4

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3AO4 \| pdb_00003ao4	Download File View File

Fragment-based approach to the design of ligands targeting a novel site on HIV-1 integrase

Wielens, J., Headey, S.J., Parker, M.W., Chalmers, D.K., Scanlon, M.J.

(2011) ChemMedChem 6: 258-261

Released	2011-03-09
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein)
Unique Ligands	833, CD, CL, SO4

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3AO5 \| pdb_00003ao5	Download File View File

Fragment-based approach to the design of ligands targeting a novel site on HIV-1 integrase

Wielens, J., Headey, S.J., Parker, M.W., Chalmers, D.K., Scanlon, M.J.

(2011) ChemMedChem 6: 258-261

Released	2011-03-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein)
Unique Ligands	BBY, CD, CL, SO4
Unique branched monosaccharides	FRU, GLC

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3AV9 \| pdb_00003av9	Download File View File

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.

(2011) Chembiochem 12: 2311-2315

Released	2012-01-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Integrase (protein) LEDGF peptide (protein)
Unique Ligands	ACY, CL, SO4

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3AVA \| pdb_00003ava	Download File View File

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.

(2011) Chembiochem 12: 2311-2315

Released	2012-01-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Integrase (protein) LEDGF peptide (protein)
Unique Ligands	ACY, CL, SO4

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3AVB \| pdb_00003avb	Download File View File

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.

(2011) Chembiochem 12: 2311-2315

Released	2012-01-18
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Integrase (protein) LEDGF peptide (protein)
Unique Ligands	ACY, CL, SO4

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3AVC \| pdb_00003avc	Download File View File

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.

(2011) Chembiochem 12: 2311-2315

Released	2012-01-18
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Integrase (protein) LEDGF peptide (protein)
Unique Ligands	ACY, CL, SO4

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3AVF \| pdb_00003avf	Download File View File

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.

(2011) Chembiochem 12: 2311-2315

Released	2012-01-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Integrase (protein) LEDGF peptide (protein)
Unique Ligands	ACY, CL, SO4

Explore in 3D

3AVG \| pdb_00003avg	Download File View File

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.

(2011) Chembiochem 12: 2311-2315

Released	2012-01-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Integrase (protein) LEDGF peptide (protein)
Unique Ligands	ACY, CL, SO4

Explore in 3D

3AVH \| pdb_00003avh	Download File View File

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.

(2011) Chembiochem 12: 2311-2315

Released	2012-01-18
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Integrase (protein) LEDGF peptide (protein)
Unique Ligands	ACY, CL, SO4

Explore in 3D

3AVI \| pdb_00003avi	Download File View File

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.

(2011) Chembiochem 12: 2311-2315

Released	2012-02-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Integrase (protein) LEDGF peptide (protein)
Unique Ligands	ACY, CL, SO4

Explore in 3D

3AVJ \| pdb_00003avj	Download File View File

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.

(2011) Chembiochem 12: 2311-2315

Released	2012-01-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Integrase (protein) LEDGF peptide (protein)
Unique Ligands	ACY, CL, SO4

Explore in 3D

3AVK \| pdb_00003avk	Download File View File

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.

(2011) Chembiochem 12: 2311-2315

Released	2012-01-18
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Integrase (protein) LEDGF peptide (protein)
Unique Ligands	ACY, CL, SO4

Explore in 3D

3AVL \| pdb_00003avl	Download File View File

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.

(2011) Chembiochem 12: 2311-2315

Released	2012-01-18
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Integrase (protein) LEDGF peptide (protein)
Unique Ligands	ACY, CL, SO4

Explore in 3D

3AVM \| pdb_00003avm	Download File View File

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.

(2011) Chembiochem 12: 2311-2315

Released	2012-01-18
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Integrase (protein) LEDGF peptide (protein)
Unique Ligands	ACY, CL, SO4

Explore in 3D

3AVN \| pdb_00003avn	Download File View File

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.

(2011) Chembiochem 12: 2311-2315

Released	2012-01-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Integrase (protein) LEDGF peptide (protein)
Unique Ligands	ACY, CL, SO4

Explore in 3D

3NF6 \| pdb_00003nf6	Download File View File

Structural basis for a new mechanism of inhibition of HIV integrase identified by fragment screening and structure based design

Peat, T.S., Newman, J., Deadman, J.J., Rhodes, D.

(2011) Antivir Chem Chemother 21: 155-168

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Integrase (protein)
Unique Ligands	ACY, CL, EDO, IMV, SO4

Explore in 3D

3NF7 \| pdb_00003nf7	Download File View File

Structural basis for a new mechanism of inhibition of HIV integrase identified by fragment screening and structure based design

Peat, T.S., Newman, J., Deadman, J.J., Rhodes, D.

(2011) Antivir Chem Chemother 21: 155-168

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Integrase (protein)
Unique Ligands	ACY, CIW, EDO, SO4