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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Berks, B.C."

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Search Summary

This query matches 39 Structures.

Refinements

Structure Determination Methodology

experimental (39)

Scientific Name of Source Organism

	Flavobacterium johnsoniae (8)
	Pseudomonas fluorescens Pf0-1 (5)
	Thermus thermophilus HB27 (5)
	Rhodovulum sulfidophilum (4)
	Paracoccus denitrificans (3)
	Capnocytophaga canimorsus Cc5 (2)
	Escherichia coli (2)
	Escherichia coli K-12 (2)
	Allochromatium vinosum (1)
	Aquifex aeolicus (1)

More...

Taxonomy

Bacteria (39)

Experimental Method

	X-RAY DIFFRACTION (22)
	ELECTRON MICROSCOPY (15)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (39)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (10)
	2.0 - 2.5 (6)
	2.5 - 3.0 (3)
	3.0 - 3.5 (8)
	3.5 - 4.0 (5)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (10)
	2010 - 2014 (9)
	2015 - 2019 (4)
	2020 - 2024 (13)

Enzyme Classification Name

	Isomerases (8)
	Hydrolases (6)
	Transferases (4)
	Oxidoreductases (1)

Membrane Protein Annotation

	OPM (11)
	PDBTM (11)
	MemProtMD (7)
	mpstruc (4)

Symmetry Type

	Asymmetric (36)
	Cyclic (4)

SCOP Classification

	All alpha proteins (4)
	All beta proteins (3)

AllSelected

1 to 25 of 39 Structures

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1H31 \| pdb_00001h31	Download File View File

Oxidised SoxAX complex from Rhodovulum sulfidophilum

Bamford, V.A., Bruno, S., Rasmussen, T., Appia-Ayme, C., Cheesman, M.R., Berks, B.C., Hemmings, A.M.

(2002) EMBO J 21: 5599

Released	2002-11-07
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Rhodovulum sulfidophilum
Macromolecule	CYTOCHROME C (protein) DIHEME CYTOCHROME C (protein)
Unique Ligands	HEC

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1H32 \| pdb_00001h32	Download File View File

Reduced SoxAX complex from Rhodovulum sulfidophilum

Bamford, V.A., Bruno, S., Rasmussen, T., Appia-Ayme, C., Cheesman, M.R., Berks, B.C., Hemmings, A.M.

(2002) EMBO J 21: 5599

Released	2002-11-07
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Rhodovulum sulfidophilum
Macromolecule	CYTOCHROME C (protein) DIHEME CYTOCHROME C (protein)
Unique Ligands	EDO, HEC

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1H33 \| pdb_00001h33	Download File View File

Oxidised SoxAX complex from Rhodovulum sulfidophilum

Bamford, V.A., Bruno, S., Rasmussen, T., Appia-Ayme, C., Cheesman, M.R., Berks, B.C., Hemmings, A.M.

(2002) EMBO J 21: 5599

Released	2002-11-07
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Rhodovulum sulfidophilum
Macromolecule	CYTOCHROME C (protein) DIHEME CYTOCHROME C (protein)
Unique Ligands	HEC

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2LZR \| pdb_00002lzr	Download File View File

TatA T22P

Rodriguez, F.M., Berks, B.C., Schnell, J.R.

(2013) Proc Natl Acad Sci U S A 110: E1092-E1101

Released	2013-03-20
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Sec-independent protein translocase protein TatA (protein)

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2LZS \| pdb_00002lzs	Download File View File

TatA oligomer

Rodriguez, F.M., Berks, B.C., Schnell, J.R.

(2013) Proc Natl Acad Sci U S A 110: E1092-E1101

Released	2013-03-20
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Sec-independent protein translocase protein TatA (protein)

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2OX5 \| pdb_00002ox5	Download File View File

The SoxYZ complex of Paracoccus pantotrophus

Bruno, S., Sauve, V., Berks, B.C., Hemmings, A.M.

(2007) J Biological Chem 282: 23194-23204

Released	2007-05-22
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Paracoccus denitrificans
Macromolecule	SoxY protein (protein) SoxZ protein (protein)
Unique Ligands	ACT, EDO, SO4

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2OXG \| pdb_00002oxg	Download File View File

The SoxYZ Complex of Paracoccus pantotrophus

Sauve, V., Berks, B.C., Hemmings, A.M.

(2007) J Biological Chem 282: 23194-23204

Released	2007-05-22
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Paracoccus denitrificans
Macromolecule	SoxY protein (protein) SoxZ protein (protein)
Unique Ligands	EDO, SO4

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2OXH \| pdb_00002oxh	Download File View File

The SOXYZ Complex of Paracoccus Pantotrophus

Sauve, V., Berks, B.C., Hemmings, A.M.

(2007) J Biological Chem 282: 23194-23204

Released	2007-05-22
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Paracoccus denitrificans
Macromolecule	SoxY protein (protein) SoxZ protein (protein)
Unique Ligands	EDO

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2OZ1 \| pdb_00002oz1	Download File View File

The SoxAX Complex of Rhodovulum Sulfidophilum

Kihlken, M.A., Berks, B.C., Hemmings, A.M.

To be published

Released	2008-01-08
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Rhodovulum sulfidophilum
Macromolecule	Cytochrome c (protein) Diheme cytochrome c (protein)
Unique Ligands	HEC

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2UXT \| pdb_00002uxt	Download File View File

SufI Protein from Escherichia Coli

Tarry, M.J., Roversi, P., Sargent, F., Berks, B.C., Lea, S.M.

(2009) J Mol Biology 386: 504

Released	2008-05-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN SUFI (protein)

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2UXV \| pdb_00002uxv	Download File View File

SufI Protein from Escherichia Coli

Tarry, M.J., Roversi, P., Sargent, F., Berks, B.C., Lea, S.M.

(2009) J Mol Biology 386: 504

Released	2008-05-13
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN SUFI (protein)

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2WDC \| pdb_00002wdc	Download File View File

Termus thermophilus Sulfate thiohydrolase SoxB in complex with glycerol

Sauve, V., Roversi, P., Leath, K.J., Garman, E.F., Antrobus, R., Lea, S.M., Berks, B.C.

(2009) J Biological Chem 284: 21707

Released	2009-06-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus HB27
Macromolecule	SULFUR OXIDATION PROTEIN SOXB (protein)
Unique Ligands	ACT, GOL, MN, TBU

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2WDD \| pdb_00002wdd	Download File View File

Termus thermophilus Sulfate thiohydrolase SoxB in complex with Sulfate

Sauve, V., Roversi, P., Leath, K.J., Garman, E.F., Antrobus, R., Lea, S.M., Berks, B.C.

(2009) J Biological Chem 284: 21707

Released	2009-06-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus HB27
Macromolecule	SULFUR OXIDATION PROTEIN SOXB (protein)
Unique Ligands	ACT, MN, SO4, TBU

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2WDE \| pdb_00002wde	Download File View File

Termus thermophilus Sulfate thiohydrolase SoxB in complex with thiosulfate

Sauve, V., Roversi, P., Leath, K.J., Garman, E.F., Antrobus, R., Lea, S.M., Berks, B.C.

(2009) J Biological Chem 284: 21707

Released	2009-06-16
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Thermus thermophilus HB27
Macromolecule	SULFUR OXIDATION PROTEIN SOXB (protein)
Unique Ligands	MN, TBU, THJ

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2WDF \| pdb_00002wdf	Download File View File

Termus thermophilus Sulfate thiohydrolase SoxB

Sauve, V., Roversi, P., Leath, K.J., Garman, E.F., Antrobus, R., Lea, S.M., Berks, B.C.

(2009) J Biological Chem 284: 21707

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Thermus thermophilus HB27
Macromolecule	SULFUR OXIDATION PROTEIN SOXB (protein)
Unique Ligands	MN, TBU

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2YEQ \| pdb_00002yeq	Download File View File

Structure of PhoD

Lillington, J.E.D., Rodriguez, F., Roversi, P., Johnson, S.J., Berks, B., Lea, S.M.

(2014) J Biological Chem 289: 30889

Released	2012-04-18
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Bacillus subtilis
Macromolecule	ALKALINE PHOSPHATASE D (protein)
Unique Ligands	CA, EDO, FE, NA, PE5, PO4

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3ZWU \| pdb_00003zwu	Download File View File

Pseudomonas fluorescens PhoX in complex with vanadate, a transition state analogue

Yong, S.C., Roversi, P., Lillington, J.E.D., Zeldin, O.B., Garman, E.F., Lea, S.M., Berks, B.C.

(2014) Science 345: 1170

Released	2012-08-08
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Pseudomonas fluorescens Pf0-1
Macromolecule	ALKALINE PHOSPHATASE PHOX (protein)
Unique Ligands	CA, CL, FEO, VO4

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4A9V \| pdb_00004a9v	Download File View File

Pseudomonas fluorescens PhoX

Yong, S.C., Roversi, P., Lillington, J.E.D., Zeldin, O.B., Garman, E.F., Lea, S.M., Berks, B.C.

(2014) Science 345: 1170

Released	2012-12-05
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Pseudomonas fluorescens Pf0-1
Macromolecule	PHOX (protein)
Unique Ligands	CA, CL, EDO, FEO, LI, NA

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4A9X \| pdb_00004a9x	Download File View File

Pseudomonas fluorescens PhoX in complex with the substrate analogue AppCp

Yong, S.C., Roversi, P., Lillington, J.E.D., Zeldin, O.B., Garman, E.F., Lea, S.M., Berks, B.C.

(2014) Science 345: 1170

Released	2012-12-05
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Pseudomonas fluorescens Pf0-1
Macromolecule	PHOX (protein)
Unique Ligands	ACP, CA, EDO, FEO

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4ALF \| pdb_00004alf	Download File View File

Pseudomonas fluorescens PhoX in complex with phosphate

Yong, S.C., Roversi, P., Lillington, J.E.D., Zeldin, O.B., Garman, E.F., Lea, S.M., Berks, B.C.

(2014) Science 345: 1170

Released	2013-03-13
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Pseudomonas fluorescens Pf0-1
Macromolecule	ALKALINE PHOSPHATASE PHOX (protein)
Unique Ligands	CA, CL, EDO, FEO, PO4

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4AMF \| pdb_00004amf	Download File View File

Pseudomonas fluorescens PhoX in complex with the substrate analogue AppCp

Yong, S.C., Roversi, P., Lillington, J.E.D., Zeldin, O.B., Garman, E.F., Lea, S.M., Berks, B.C.

(2014) Science 345: 1170

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Pseudomonas fluorescens Pf0-1
Macromolecule	PHOX (protein)
Unique Ligands	ACP, CA, CL, EDO, FEO, LI

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4B4A \| pdb_00004b4a	Download File View File

Structure of the TatC core of the twin arginine protein translocation system

Rollauer, S.E., Tarry, M.J., Jaaskelainen, M., Graham, J.E., Jaeger, F., Krehenbrink, M., Roversi, P., McDowell, M.A., Stansfeld, P.J., Johnson, S., Liu, S.M., Lukey, M.J., Marcoux, J., Robinson, C.V., Sansom, M.S., Palmer, T., Hogbom, M., Berks, B.C., Lea, S.M.

(2012) Nature 49: 210

Released	2012-12-05
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Aquifex aeolicus
Macromolecule	SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC (protein)
Unique Ligands	LMN

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4UWQ \| pdb_00004uwq	Download File View File

Crystal structure of the disulfide-linked complex of the thiosulfodyrolase SoxB with the carrier-protein SoxYZ from Thermus thermophilus

Grabarczyk, D.B., Chappell, P.E., Johnson, S., Stelzl, L.S., Lea, S.M., Berks, B.C.

(2015) Proc Natl Acad Sci U S A 112: E7166

Released	2015-12-09
Method	X-RAY DIFFRACTION 3.28 Å
Organisms	Thermus thermophilus HB27
Macromolecule	SOXY PROTEIN (protein) SOXZ (protein) SULFUR OXIDATION PROTEIN SOXB (protein)
Unique Ligands	MN

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4V2K \| pdb_00004v2k	Download File View File

Crystal structure of the thiosulfate dehydrogenase TsdA in complex with thiosulfate

Grabarczyk, D.B., Chappell, P.E., Eisel, B., Johnson, S., Lea, S.M., Berks, B.C.

(2015) J Biological Chem 290: 9209

Released	2015-02-18
Method	X-RAY DIFFRACTION 1.29 Å
Organisms	Allochromatium vinosum
Macromolecule	THIOSULFATE DEHYDROGENASE (protein)
Unique Ligands	HEC, THJ

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6H3I \| pdb_00006h3i	Download File View File

Structural snapshots of the Type 9 protein translocon

Deme, J.C., Lea, S.M.

(2018) Nature 564: 77-82

Released	2018-11-07
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Flavobacterium johnsoniae
Macromolecule	Peptidyl-prolyl cis-trans isomerase (protein) PorV (protein) Protein involved in gliding motility SprA (protein)

1 to 25 of 39 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1H31 | pdb_00001h31

1H32 | pdb_00001h32

1H33 | pdb_00001h33

2LZR | pdb_00002lzr

2LZS | pdb_00002lzs

2OX5 | pdb_00002ox5

2OXG | pdb_00002oxg

2OXH | pdb_00002oxh

2OZ1 | pdb_00002oz1

2UXT | pdb_00002uxt

2UXV | pdb_00002uxv

2WDC | pdb_00002wdc

2WDD | pdb_00002wdd

2WDE | pdb_00002wde

2WDF | pdb_00002wdf

2YEQ | pdb_00002yeq

3ZWU | pdb_00003zwu

4A9V | pdb_00004a9v

4A9X | pdb_00004a9x

4ALF | pdb_00004alf

4AMF | pdb_00004amf

4B4A | pdb_00004b4a

4UWQ | pdb_00004uwq

4V2K | pdb_00004v2k

6H3I | pdb_00006h3i