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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Subirana, J.A."

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Search Summary

This query matches 43 Structures.

Refinements

Structure Determination Methodology

experimental (43)

Scientific Name of Source Organism

synthetic construct (6)

Taxonomy

other sequences (6)

Experimental Method

X-RAY DIFFRACTION (43)

Polymer Entity Type

	DNA (43)
	Protein (2)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (2)
	1.5 - 2.0 (8)
	2.0 - 2.5 (10)
	2.5 - 3.0 (12)
	3.0 - 3.5 (10)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (16)
	2000 - 2004 (11)
	2005 - 2009 (8)
	2010 - 2014 (6)
	2015 - 2019 (1)

Symmetry Type

Asymmetric (2)

AllSelected

1 to 25 of 43 Structures

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192D \| pdb_0000192d	Download File View File

RECOMBINATION-LIKE STRUCTURE OF D(CCGCGG)

Malinina, L., Urpi, L., Salas, X., Huynh-Dinh, T., Subirana, J.A.

(1994) J Mol Biology 243: 484-493

Released	1995-02-07
Method	X-RAY DIFFRACTION 1.92 Å
Macromolecule	DNA (5'-D(CPCPGPCPGPG)-3') (nucleic acid)
Unique Ligands	NA

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1ENN \| pdb_00001enn	Download File View File

SOLVENT ORGANIZATION IN AN OLIGONUCLEOTIDE CRYSTAL: THE STRUCTURE OF D(GCGAATTCG)2 AT ATOMIC RESOLUTION

Soler-Lopez, M., Malinina, L., Subirana, J.A.

(2000) J Biological Chem 275: 23034-23044

Released	2000-05-03
Method	X-RAY DIFFRACTION 0.89 Å
Macromolecule	DNA (5'-D(GPCPGPAPAPTPTPCP*G)-3') (nucleic acid)
Unique Ligands	CL, MG, O

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1G00 \| pdb_00001g00	Download File View File

ALTERNATION OF DNA AND SOLVENT LAYERS IN THE A FORM OF D(GGCGCC) OBTAINED BY ETHANOL CRYSTALLIZATION

Urpi, L., Navaza, J., Subirana, J.A.

(2000) J Biomol Struct Dyn 18: 363-369

Released	2001-02-05
Method	X-RAY DIFFRACTION 2.3 Å
Macromolecule	5'-D(GPGPCPGPCPC)-3' (nucleic acid)

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1G3V \| pdb_00001g3v	Download File View File

CRYSTAL STRUCTURE OF NICKEL-D[CGTGTACACG]2

Subirana, J.A., Abrescia, N.G.A.

(2002) J Biol Inorg Chem 7: 195-199

Released	2002-01-11
Method	X-RAY DIFFRACTION 3.1 Å
Macromolecule	5'-D(CPGPTPGPTPAPCPAPCPG)-3' (nucleic acid)
Unique Ligands	NI

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1G3X \| pdb_00001g3x	Download File View File

INTERCALATION OF AN 9ACRIDINE-PEPTIDE DRUG IN A DNA DODECAMER

Malinina, L., Soler-Lopez, M., Aymami, J., Subirana, J.A.

(2002) Biochemistry 41: 9341-9348

Released	2002-08-16
Method	X-RAY DIFFRACTION 2.7 Å
Macromolecule	N(ALPHA)-(9-ACRIDINOYL)-TETRAARGININE-AMIDE (protein) 5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3' (nucleic acid)
Unique Ligands	MG

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1G6D \| pdb_00001g6d	Download File View File

STRUCTURE OF PEPTIDYL-D(CGCAATTGCG) IN THE PRESENCE OF ZINC IONS

Soler-Lopez, M., Malinina, L., Tereshko, V., Zarytova, V., Subirana, J.A.

(2002) J Biol Inorg Chem 7: 533-538

Released	2002-04-19
Method	X-RAY DIFFRACTION 2.9 Å
Macromolecule	PEPTIDYL-D(CGCAATTGCG) (nucleic acid)
Unique Ligands	ZN

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1GQU \| pdb_00001gqu	Download File View File

Crystal structure of an alternating A-T oligonucleotide fragment with Hoogsteen base pairing

Abrescia, N.G.A., Thompson, A., Huynh-Dinh, T., Subirana, J.A.

(2002) Proc Natl Acad Sci U S A 99: 2806

Released	2002-12-05
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	DNA (5'(APTPAPUPAPT)-3') (nucleic acid)

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1RSB \| pdb_00001rsb	Download File View File

X-ray study of the DNA oligomer d(ATATAT) in P65 space group

Abrescia, N.G., Gonzalez, C., Gouyette, C., Subirana, J.A.

(2004) Biochemistry 43: 4092-4100

Released	2004-05-25
Method	X-RAY DIFFRACTION 2.17 Å
Macromolecule	5'-D(APTPAPTPAPT)-3' (nucleic acid)

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1S23 \| pdb_00001s23	Download File View File

Crystal Structure Analysis of the B-DNA Decamer CGCAATTGCG

Valls, N., Wright, G., Steiner, R.A., Murshudov, G.N., Subirana, J.A.

(2004) Acta Crystallogr D Biol Crystallogr 60: 680-685

Released	2004-04-06
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	5'-D(CPGPCPAPAPTPTPGPCPG)-3' (nucleic acid)
Unique Ligands	CO

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1S45 \| pdb_00001s45	Download File View File

Crystal structure analysis of the DNA quadruplex d(TGGGGT) S1

Caceres, C., Wright, G., Gouyette, C., Parkinson, G., Subirana, J.A.

(2004) Nucleic Acids Res 32: 1097-1102

Released	2004-02-24
Method	X-RAY DIFFRACTION 2.2 Å
Macromolecule	5'-D(TPGPGPGPGPT)-3' (nucleic acid)
Unique Ligands	MG, NA, TL

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1S47 \| pdb_00001s47	Download File View File

Crystal structure analysis of the DNA quadruplex d(TGGGGT)S2

Caceres, C., Wright, G., Gouyette, C., Parkinson, G., Subirana, J.A.

(2004) Nucleic Acids Res 32: 1097-1102

Released	2004-02-24
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	5'-D(TPGPGPGPGPT)-3' (nucleic acid)
Unique Ligands	NA, TL

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1S9B \| pdb_00001s9b	Download File View File

Crystal Structure Analysis of the B-DNA GAATTCG

Valls, N., Uson, I., Gouyette, C., Subirana, J.A.

(2004) J Am Chem Soc 126: 7812-7816

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.81 Å
Macromolecule	5'-D(GPAPAPTPTPCP*G)-3' (nucleic acid)
Unique Ligands	NI

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1XCS \| pdb_00001xcs	Download File View File

structure of oligonucleotide/drug complex

Valls, N., Steiner, R.A., Wright, G., Murshudov, G.N., Subirana, J.A.

(2005) J Biol Inorg Chem 10: 476-482

Released	2005-07-19
Method	X-RAY DIFFRACTION 1.4 Å
Macromolecule	5'-D(CPGPTPAPCPG)-3' (nucleic acid)
Unique Ligands	A4L, BA, CO

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1XCU \| pdb_00001xcu	Download File View File

oligonucleotid/drug complex

Valls, N., Steiner, R.A., Wright, G., Murshudov, G.N., Subirana, J.A.

(2005) J Biol Inorg Chem 10: 476-482

Released	2005-07-19
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	5'-D(CPGPTPAPCPG)-3' (nucleic acid)
Unique Ligands	AN9, BA, CO, NA

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249D \| pdb_0000249d	Download File View File

STRUCTURAL COMPARISON BETWEEN THE D(CTAG) SEQUENCE IN OLIGONUCLEOTIDES AND TRP AND MET REPRESSOR-OPERATOR COMPLEXES

Urpi, L., Tereshko, V., Malinina, L., Huynh-Dinh, T., Subirana, J.A.

(1996) Nat Struct Biol 3: 325-328

Released	1996-04-19
Method	X-RAY DIFFRACTION 2.25 Å
Macromolecule	DNA (5'-D(CPGPCPTPCPTPAPGPAPGPCPG)-3') (nucleic acid)
Unique Ligands	CA

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250D \| pdb_0000250d	Download File View File

STRUCTURAL COMPARISON BETWEEN THE D(CTAG) SEQUENCE IN OLIGONUCLEOTIDES AND TRP AND MET REPRESSOR-OPERATOR COMPLEXES

Urpi, L., Tereshko, V., Malinina, L., Huynh-Dinh, T., Subirana, J.A.

(1996) Nat Struct Biol 3: 325-328

Released	1996-04-19
Method	X-RAY DIFFRACTION 2.47 Å
Macromolecule	DNA (5'-D(CPGPCPTPAPGPCPG)-3') (nucleic acid)

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2A2T \| pdb_00002a2t	Download File View File

crystal structure of d(AAATATTT)

Valls, N., Richter, M., Subirana, J.A.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1587-1593

Released	2005-11-29
Method	X-RAY DIFFRACTION 3.1 Å
Macromolecule	5'-D(APAPAPTPAPTPTPT)-3' (nucleic acid)
Unique Ligands	CAC, MN

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2AF1 \| pdb_00002af1	Download File View File

Structure of the DNA coiled-coil formed by d(CGATATATATAT)

De Luchi, D., Tereshko, V., Gouyette, C., Subirana, J.A.

(2006) Chembiochem 7: 585-587

Released	2006-03-07
Method	X-RAY DIFFRACTION 3.1 Å
Macromolecule	5'-D(CPGPAPTPAPTPAPTPAPTPAPT)-3' (nucleic acid)

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2D47 \| pdb_00002d47	Download File View File

MOLECULAR STRUCTURE OF A COMPLETE TURN OF A-DNA

Verdaguer, N., Aymami, J., Fernandez-Forner, D., Fita, I., Coll, M., Huynh-Dinh, T., Igolen, J., Subirana, J.A.

(1991) J Mol Biology 221: 623-635

Released	1991-10-02
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	DNA (5'-D(CPCPCPCPCPGPCPGPGPGPGPG)-3') (nucleic acid)
Unique Ligands	SPM

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2G1Z \| pdb_00002g1z	Download File View File

X-ray structure of the oligonucleotide sequence d(AAATTT)

Valls, N., Santaolalla, A., Campos, J.L., Subirana, J.A.

(2007) J Biomol Struct Dyn 24: 547-552

Released	2006-03-21
Method	X-RAY DIFFRACTION 3.11 Å
Macromolecule	5'-D(APAPAPTPTPT)-3' (nucleic acid)

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2QS6 \| pdb_00002qs6	Download File View File

Structure of a Hoogsteen antiparallel duplex with extra-helical thymines

Pous, J., Urpi, L., Subirana, J.A., Gouyette, C., Navaza, J., Campos, J.L.

(2008) J Am Chem Soc 130: 6755-6760

Released	2008-03-25
Method	X-RAY DIFFRACTION 3.08 Å
Macromolecule	DNA (5'-D(DAPDTPDAPDTPDAPDTPDCPDT)-3') (nucleic acid)

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368D \| pdb_0000368d	Download File View File

STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG)

Fernandez, L.G., Subirana, J.A., Verdaguer, N., Pyshnyi, D., Campos, L., Malinina, L.

(1997) J Biomol Struct Dyn 15: 151-163

Released	1998-07-15
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	DNA (5'-D(PCPCPCPGPCPGPGPG)-3') (nucleic acid)

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369D \| pdb_0000369d	Download File View File

STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG)

Fernandez, L.G., Subirana, J.A., Verdaguer, N., Pyshnyi, D., Campos, L.

(1997) J Biomol Struct Dyn 15: 151-163

Released	1998-07-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(PCPCPCPGPCPGPGPG)-3') (nucleic acid)

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370D \| pdb_0000370d	Download File View File

STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG)

Fernandez, L.G., Subirana, J.A., Verdaguer, N., Pyshnyi, D., Campos, L.

(1997) J Biomol Struct Dyn 15: 151-163

Released	1998-07-15
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(PCPCPCPGPCPGPGPG)-3') (nucleic acid)
Unique Ligands	MG