RCSB PDB: Search

3O0A \| pdb_00003o0a	Download File View File

Crystal structure of the wild type CP1 hydrolitic domain from Aquifex Aeolicus leucyl-trna

Cura, V., Olieric, N., Wang, E.-D., Moras, D., Eriani, G., Cavarelli, J.

To be published

Released	2010-11-17
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Aquifex aeolicus
Macromolecule	Leucyl-tRNA synthetase subunit alpha (protein)

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3Q0X \| pdb_00003q0x	Download File View File

N-terminal coiled-coil dimer domain of C. reinhardtii SAS-6 homolog Bld12p

Kitagawa, D., Vakonakis, I., Olieric, N., Hilbert, M., Keller, D., Olieric, V., Bortfeld, M., Erat, M.C., Flueckiger, I., Goenczy, P., Steinmetz, M.O.

(2011) Cell 144: 364-375

Released	2011-02-09
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Centriole protein (protein)

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3Q0Y \| pdb_00003q0y	Download File View File

N-terminal domain of C. reinhardtii SAS-6 homolog Bld12p

Kitagawa, D., Vakonakis, I., Olieric, N., Hilbert, M., Keller, D., Olieric, V., Bortfeld, M., Erat, M.C., Flueckiger, I., Goenczy, P., Steinmetz, M.O.

(2011) Cell 144: 364-375

Released	2011-02-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Centriole protein (protein)

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5NM5 \| pdb_00005nm5	Download File View File

Tubulin Darpin room-temperature structure in complex with Colchicine determined by serial millisecond crystallography

Weinert, T., Olieric, N., James, D., Gashi, D., Nogly, P., Jaeger, K., Steinmetz, M.O., Standfuss, J.

(2017) Nat Commun 8: 542-542

Released	2017-09-27
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Designed Ankyrin Repeat Protein (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	GDP, GTP, LOC, MG

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5NQT \| pdb_00005nqt	Download File View File

Tubulin Darpin room-temperature structure determined by serial millisecond crystallography

Weinert, T., Olieric, N., James, D., Gashi, D., Nogly, P., Jaeger, K., Steinmetz, M.O., Standfuss, J.

(2017) Nat Commun 8: 542-542

Released	2017-09-27
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bos taurus synthetic construct
Macromolecule	DESIGNED ANKYRIN REPEAT PROTEIN (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	GDP, GTP, MG

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5NQU \| pdb_00005nqu	Download File View File

Tubulin Darpin cryo structure

Weinert, T., Olieric, N., James, D., Gashi, D., Nogly, P., Jaeger, K., Steinmetz, M.O., Standfuss, J.

(2017) Nat Commun 8: 542-542

Released	2017-09-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Designed Ankyrin Repeat Protein (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	GDP, GTP, MG

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5NR4 \| pdb_00005nr4	Download File View File

Crystal structure of Clasp2 TOG1 domain

Sharma, A., Olieric, N., Weinert, T., Olieric, V., Steinmetz, M.O.

(2018) Dev Cell 46: 40-58.e8

Released	2018-05-30
Method	X-RAY DIFFRACTION 1.198 Å
Organisms	Homo sapiens
Macromolecule	CLIP-associating protein 2 (protein)

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5O7A \| pdb_00005o7a	Download File View File

Quinolin-6-yloxyacetamides are microtubule destabilizing agents that bind to the colchicine site of tubulin

Sharma, A., Olieric, N., Steinmetz, M.O.

(2017) Int J Mol Sci 18:

Released	2017-07-05
Method	X-RAY DIFFRACTION 2.495 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Uncharacterized protein (protein)
Unique Ligands	9N5, ACP, GDP, GTP, MG

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6FLJ \| pdb_00006flj	Download File View File

Crystal structure of Cep120 C2A_K76A mutant

Sharma, A., Gerard, S.F., Olieric, N., Steinmetz, M.O.

(2018) J Struct Biol 203: 62-70

Released	2018-02-14
Method	X-RAY DIFFRACTION 1.751 Å
Organisms	Homo sapiens
Macromolecule	Centrosomal protein of 120 kDa (protein)

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6FLK \| pdb_00006flk	Download File View File

Crystal structure of Cep120 C2C domain

Sharma, A., Gerard, S.F., Olieric, N., Steinmetz, M.O.

(2018) J Struct Biol 203: 62-70

Released	2018-02-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Cep120 (protein)

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6GF3 \| pdb_00006gf3	Download File View File

Tubulin-Jerantinine B acetate complex

Smedley, C.J., Stanley, P.A., Qazzaz, M.E., Prota, A.E., Olieric, N., Collins, H., Eastman, H., Barrow, A.S., Lim, K.-H., Kam, T.-S., Smith, B.J., Duivenvoorden, H.M., Parker, B.S., Bradshaw, T.D., Steinmetz, M.O., Moses, J.E.

(2018) Sci Rep 8: 10617-10617

Released	2019-05-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin tyrosine ligase (protein)
Unique Ligands	ACP, CA, EDO, EX5, GDP, GTP, MES, MG

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6GJ4 \| pdb_00006gj4	Download File View File

Tubulin-6j complex

Brindisi, M., Ulivieri, C., Alfano, G., Gemma, S., Balaguer, F.d.A., Khan, T., Grillo, A., Chemi, G., Menchon, G., Prota, A.E., Olieric, N., Agell, D.L., Barasoain, I., Diaz, J.F., Nebbioso, A., Conte, M.R., Lopresti, L., Magnano, S., Amet, R., Kinsella, P., Zisterer, D.M., Ibrahim, O., O'Sullivan, J., Morbidelli, L., Spaccapelo, R., Baldari, C., Butini, S., Novellino, E., Campiani, G., Altucci, L., Steinmetz, M.O., Brogi, S.

(2018) Eur J Med Chem 162: 290-320

Released	2018-12-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin tyrosine ligase (protein)
Unique Ligands	ACP, CA, EZW, GDP, GTP, MES, MG

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6I59 \| pdb_00006i59	Download File View File

Long wavelength native-SAD phasing of Sen1 helicase

Basu, S., Olieric, V., Matsugaki, N., Kawano, Y., Takashi, T., Huang, C.Y., Leonarski, F., Yamada, Y., Vera, L., Olieric, N., Basquin, J., Wojdyla, J.A., Diederichs, K., Yamamoto, M., Bunk, O., Wang, M.

(2019) IUCrJ 6: 373-386

Released	2019-03-13
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Helicase SEN1 (protein)
Unique Ligands	ADP, EDO, GOL, MG, PEG

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6I5C \| pdb_00006i5c	Download File View File

Long wavelength native-SAD phasing of Tubulin-Stathmin-TTL complex

Basu, S., Olieric, V., Matsugaki, N., Kawano, Y., Takashi, T., Huang, C.Y., Leonarski, F., Yamada, Y., Vera, L., Olieric, N., Basquin, J., Wojdyla, J.A., Diederichs, K., Yamamoto, M., Bunk, O., Wang, M.

(2019) IUCrJ 6: 373-386

Released	2019-03-13
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) TUBULIN-TYROSINE LIGASE (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	ACP, CA, CL, GDP, GTP, MES, MG

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6QBY \| pdb_00006qby	Download File View File

Crystal structure of VASH 2 in complex with SVBP

Choi, S.R., Olieric, V., Steinmetz, M.O., Olieric, N.

(2019) Nat Struct Mol Biol 26: 571-582

Released	2019-04-24
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Homo sapiens
Macromolecule	Small vasohibin-binding protein (protein) Tubulinyl-Tyr carboxypeptidase 2 (protein)

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6S0L \| pdb_00006s0l	Download File View File

Structure of the A2A adenosine receptor determined at SwissFEL using native-SAD at 4.57 keV from all available diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	A2a adenosine receptor (protein)
Unique Ligands	CLR, OLA, OLB, OLC, ZMA

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6S0Q \| pdb_00006s0q	Download File View File

Structure of the A2A adenosine receptor determined at SwissFEL using native-SAD at 4.57 keV from 50,000 diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a (protein)
Unique Ligands	CLR, OLA, OLB, OLC, ZMA

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6S19 \| pdb_00006s19	Download File View File

Structure of thaumatin determined at SwissFEL using native-SAD at 4.57 keV from all available diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.Ch.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	TLA

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6S1D \| pdb_00006s1d	Download File View File

Structure of thaumatin determined at SwissFEL using native-SAD at 4.57 keV from 20,000 diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	TLA

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6S1E \| pdb_00006s1e	Download File View File

Structure of thaumatin determined at SwissFEL using native-SAD at 6.06 keV from all available diffraction patterns

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	TLA

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6S1G \| pdb_00006s1g	Download File View File

Structure of thaumatin determined at SwissFEL using native-SAD at 6.06 keV from 50,000 diffraction patterns.

Nass, K., Cheng, R., Vera, L., Mozzanica, A., Redford, S., Ozerov, D., Basu, S., James, D., Knopp, G., Cirelli, C., Martiel, I., Casadei, C., Weinert, T., Nogly, P., Skopintsev, P., Usov, I., Leonarski, F., Geng, T., Rappas, M., Dore, A.S., Cooke, R., Nasrollahi Shirazi, S., Dworkowski, F., Sharpe, M., Olieric, N., Steinmetz, M.O., Schertler, G., Abela, R., Patthey, L., Schmitt, B., Hennig, M., Standfuss, J., Wang, M., Milne, J.C.

(2020) IUCrJ 7: 965-975

Released	2020-07-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin-1 (protein)
Unique Ligands	TLA

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6S8K \| pdb_00006s8k	Download File View File

Structure, Thermodynamics, and Kinetics of Plinabulin Binding to two Tubulin Isotypes

Sharma, A., Olieric, N., Steinmetz, M.

(2019) Chem 5:

Released	2019-11-27
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Designed ankyrin repeat protein (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	GDP, GTP, MG, PN6

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6S8L \| pdb_00006s8l	Download File View File

Structure, Thermodynamics, and Kinetics of Plinabulin Binding to two Tubulin Isotypes

Sharma, A., Olieric, N., Steinmetz, M.

(2019) Chem

Released	2019-11-27
Method	X-RAY DIFFRACTION 1.801 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Designed ankyrin repeat protein (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-3 chain (protein)
Unique Ligands	GDP, GTP, MG, PN6

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6ZPG \| pdb_00006zpg	Download File View File

Kinesin binding protein (KBP)

Atherton, J., Hummel, J.J.A., Olieric, N., Locke, J., Pena, A., Rosenfeld, S.S., Steinmetz, M.O., Hoogenraad, C.C., Moores, C.A.

(2020) Elife 9:

Released	2020-12-30
Method	ELECTRON MICROSCOPY 4.6 Å
Organisms	Homo sapiens
Macromolecule	KIF-binding protein (protein)

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6ZPH \| pdb_00006zph	Download File View File

Kinesin binding protein complexed with Kif15 motor domain

Atherton, J., Hummel, J.J.A., Olieric, N., Locke, J., Pena, A., Rosenfeld, S.S., Steinmetz, M.O., Hoogenraad, C.C., Moores, C.A.

(2020) Elife 9:

Released	2020-12-30
Method	ELECTRON MICROSCOPY 6.9 Å
Organisms	Homo sapiens
Macromolecule	KIF-binding protein (protein) Kinesin-like protein KIF15 (protein)
Unique Ligands	ADP, MG

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3O0A | pdb_00003o0a

3Q0X | pdb_00003q0x

3Q0Y | pdb_00003q0y

5NM5 | pdb_00005nm5

5NQT | pdb_00005nqt

5NQU | pdb_00005nqu

5NR4 | pdb_00005nr4

5O7A | pdb_00005o7a

6FLJ | pdb_00006flj

6FLK | pdb_00006flk

6GF3 | pdb_00006gf3

6GJ4 | pdb_00006gj4

6I59 | pdb_00006i59

6I5C | pdb_00006i5c

6QBY | pdb_00006qby

6S0L | pdb_00006s0l

6S0Q | pdb_00006s0q

6S19 | pdb_00006s19

6S1D | pdb_00006s1d

6S1E | pdb_00006s1e

6S1G | pdb_00006s1g

6S8K | pdb_00006s8k

6S8L | pdb_00006s8l

6ZPG | pdb_00006zpg

6ZPH | pdb_00006zph