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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Mogni, M."

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Search Summary

This query matches 109 Structures.

Refinements

Structure Determination Methodology

experimental (109)

Scientific Name of Source Organism

	Homo sapiens (32)
	Candidatus Scalindua brodae (7)
	Escherichia coli K-12 (7)
	synthetic construct (7)
	Escherichia coli (6)
	Neisseria lactamica (6)
	Pyrococcus furiosus DSM 3638 (6)
	Geobacter sulfurreducens PCA (5)
	Schizosaccharomyces pombe 972h- (5)
	Aequorea victoria (4)

More...

Taxonomy

	Bacteria (55)
	Eukaryota (47)
	other sequences (7)
	Archaea (6)
	Riboviria (5)
	unclassified sequences (3)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (63)
	ELECTRON MICROSCOPY (42)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (108)
	RNA (32)
	DNA (25)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (18)
	2.0 - 2.5 (24)
	2.5 - 3.0 (14)
	3.0 - 3.5 (24)
	3.5 - 4.0 (19)
	> 4.5 (3)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (5)
	2015 - 2019 (29)
	2020 - 2024 (70)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (32)
	Transferases (29)
	Oxidoreductases (8)
	Isomerases (1)

Symmetry Type

	Asymmetric (71)
	Cyclic (28)
	Dihedral (9)
	Octahedral (7)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (13)
	Alpha and beta proteins (a/b) (11)
	Artifacts (13)
	All alpha proteins (3)

AllSelected

1 to 25 of 109 Structures

Page 1 of 5

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1ZY4 \| pdb_00001zy4	Download File View File

Crystal Structure of eIF2alpha Protein Kinase GCN2: R794G Hyperactivating Mutant in Apo Form.

Padyana, A.K., Qiu, H., Roll-Mecak, A., Hinnebusch, A.G., Burley, S.K.

(2005) J Biological Chem 280: 29289-29299

Released	2005-06-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Serine/threonine-protein kinase GCN2 (protein)
Unique Ligands	GOL

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1ZY5 \| pdb_00001zy5	Download File View File

Crystal Structure of eIF2alpha Protein Kinase GCN2: R794G Hyperactivating Mutant Complexed with AMPPNP.

Padyana, A.K., Qiu, H., Roll-Mecak, A., Hinnebusch, A.G., Burley, S.K.

(2005) J Biological Chem 280: 29289-29299

Released	2005-06-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Serine/threonine-protein kinase GCN2 (protein)
Unique Ligands	ANP, MG

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2MYN \| pdb_00002myn	Download File View File

An arsenate reductase in reduced state

Jin, C., Yu, C., Hu, C., Hu, Y.

(2015) J Biological Chem 290: 22262-22273

Released	2015-08-05
Method	SOLUTION NMR
Organisms	Synechocystis sp. PCC 6803 substr. Kazusa
Macromolecule	Glutaredoxin arsenate reductase (protein)

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2MYP \| pdb_00002myp	Download File View File

An arsenate reductase in the phosphate binding state

Jin, C., Yu, C., Hu, C., Hu, Y.

(2015) J Biological Chem 290: 22262-22273

Released	2015-08-05
Method	SOLUTION NMR
Organisms	Synechocystis sp. PCC 6803 substr. Kazusa
Macromolecule	Glutaredoxin arsenate reductase (protein)

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2MYT \| pdb_00002myt	Download File View File

An arsenate reductase in the intermediate state

Jin, C., Yu, C., Hu, C., Hu, Y.

(2015) J Biological Chem 290: 22262-22273

Released	2015-08-05
Method	SOLUTION NMR
Organisms	Synechocystis sp. PCC 6803 substr. Kazusa
Macromolecule	Glutaredoxin arsenate reductase (protein)

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2MYU \| pdb_00002myu	Download File View File

An arsenate reductase in oxidized state

Jin, C., Hu, C., Hu, Y.

(2015) J Biological Chem 290: 22262-22273

Released	2015-08-05
Method	SOLUTION NMR
Organisms	Synechocystis sp. PCC 6803 substr. Kazusa
Macromolecule	Glutaredoxin arsenate reductase (protein)

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3M95 \| pdb_00003m95	Download File View File

Crystal structure of autophagy-related protein Atg8 from the silkworm Bombyx mori

Teng, Y.-B., Hu, C., Zhang, X., Jiang, Y.L., Hu, H.-X., Zhou, C.Z.

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 787-790

Released	2010-07-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bombyx mori
Macromolecule	Autophagy related protein Atg8 (protein)

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4GES \| pdb_00004ges	Download File View File

crystal structure of GFP-TYR151PYZ with an unnatural amino acid incorporation

Dong, J., Liu, X., Li, J., Wang, J., Gong, W.

(2012) Angew Chem Int Ed Engl 51: 10261-10265

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.23 Å
Organisms	Aequorea victoria
Macromolecule	Green fluorescent protein (protein)

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4GF6 \| pdb_00004gf6	Download File View File

crystal structure of GFP with cuprum bound at the Incorporated metal Chelating Amino Acid PYZ151

Dong, J., Liu, X., Li, J., Wang, J., Gong, W.

(2012) Angew Chem Int Ed Engl 51: 10261-10265

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Aequorea victoria
Macromolecule	green fluorescent protein (protein)
Unique Ligands	CA, CU

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4JFG \| pdb_00004jfg	Download File View File

Crystal structure of sfGFP-66-HqAla

Wang, J., Liu, X., Li, J., Zhang, W., Hu, M., Zhou, J.

(2013) Angew Chem Int Ed Engl 52: 4805-4809

Released	2013-10-02
Method	X-RAY DIFFRACTION 3.001 Å
Organisms	Aequorea victoria
Macromolecule	Green fluorescent protein (protein)
Unique Ligands	CS, HQY

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4QLA \| pdb_00004qla	Download File View File

Crystal structure of juvenile hormone epoxide hydrolase from the silkworm Bombyx mori

Zhou, K., Jia, N., Hu, C., Jiang, Y.L., Yang, J.P., Chen, Y., Li, S., Zhou, C.Z.

(2014) Proteins 82: 3224-3229

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bombyx mori
Macromolecule	Juvenile hormone epoxide hydrolase (protein)
Unique Ligands	1PE

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4WD5 \| pdb_00004wd5	Download File View File

Crystal structure of EGFR 696-1022 T790M in complex with QL-X138

Yun, C.H., Eck, M.J.

To be published

Released	2016-05-04
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein)
Unique Ligands	3LH, CL

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4ZSE \| pdb_00004zse	Download File View File

Crystal structure of EGFR 696-1022 T790M/V948R, crystal form II

Yan, X.E., Yun, C.H.

To be published

Released	2016-06-15
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein)
Unique Ligands	ANP, EDO, MG

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5F59 \| pdb_00005f59	Download File View File

The crystal structure of MLL3 SET domain

Li, Y., Lei, M., Chen, Y.

(2016) Nature 530: 447-452

Released	2016-02-24
Method	X-RAY DIFFRACTION 2.801 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase 2C (protein)
Unique Ligands	SAH, ZN

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5F5E \| pdb_00005f5e	Download File View File

The Crystal Structure of MLL1 SET domain with N3816I/Q3867L mutation

Li, Y., Lei, M., Chen, Y.

(2016) Nature 530: 447-452

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.802 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase 2A (protein)
Unique Ligands	SAH, ZN

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5F6K \| pdb_00005f6k	Download File View File

Crystal structure of the MLL3-Ash2L-RbBP5 complex

Li, Y., Lei, M., Chen, Y.

(2016) Nature 530: 447-452

Released	2016-02-24
Method	X-RAY DIFFRACTION 2.411 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase 2C (protein) Retinoblastoma-binding protein 5 (protein) Set1/Ash2 histone methyltransferase complex subunit ASH2,Set1/Ash2 histone methyltransferase complex subunit ASH2 (protein) peptide ARTKQTARK (protein)
Unique Ligands	SAH, ZN

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5F6L \| pdb_00005f6l	Download File View File

The crystal structure of MLL1 (N3861I/Q3867L) in complex with RbBP5 and Ash2L

Li, Y., Lei, M., Chen, Y.

(2016) Nature 530: 447-452

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase 2A (protein) Retinoblastoma-binding protein 5 (protein) Set1/Ash2 histone methyltransferase complex subunit ASH2 (protein)
Unique Ligands	SAH, ZN

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5GNK \| pdb_00005gnk	Download File View File

Crystal structure of EGFR 696-988 T790M in complex with LXX-6-34

Yan, X.E., Yun, C.H.

(2017) J Med Chem 60: 2944-2962

Released	2017-04-05
Method	X-RAY DIFFRACTION 1.796 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein)
Unique Ligands	80U, CL, EDO, NO3

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5GTY \| pdb_00005gty	Download File View File

Crystal structure of EGFR 696-1022 T790M in complex with LXX-6-26

Yan, X.E., Yun, C.H.

(2017) Oncotarget 8: 18359-18372

Released	2017-09-06
Method	X-RAY DIFFRACTION 3.14 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein)
Unique Ligands	816, EDO

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5HU9 \| pdb_00005hu9	Download File View File

Crystal structure of ABL1 in complex with CHMFL-074

Kong, L.L., Yun, C.H.

(2016) Oncotarget 7: 45562-45574

Released	2016-07-13
Method	X-RAY DIFFRACTION 1.529 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase ABL1 (protein)
Unique Ligands	66K, CL, EDO

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5WQD \| pdb_00005wqd	Download File View File

Crystal structure of TRF2 TRFH in complex with an NBS1 peptide

Hu, C., Chen, Y., Lei, M.

(2017) Mol Cell 65: 801-817.e4

Released	2017-03-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Nibrin (protein) Telomeric repeat-binding factor 2 (protein)

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5XYF \| pdb_00005xyf	Download File View File

Crystal structure of the human TIN2-TPP1-TRF2 telomeric complex

Hu, C., Chen, Y.

(2017) Cell Res 27: 1485-1502

Released	2017-12-13
Method	X-RAY DIFFRACTION 2.202 Å
Organisms	Homo sapiens
Macromolecule	Adrenocortical dysplasia protein homolog (protein) TERF1-interacting nuclear factor 2 (protein) Telomeric repeat-binding factor 2 (protein)

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5YBX \| pdb_00005ybx	Download File View File

Crystal structure of the N-terminal domain of Bqt4 in S.pombe

Hu, C., Chen, Y.

(2019) Structure 27: 335

Released	2018-09-19
Method	X-RAY DIFFRACTION 2.501 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Bouquet formation protein 4 (protein)

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5YC2 \| pdb_00005yc2	Download File View File

Crystal structure of inner membrane protein Bqt4 in complex with telomeric protein Rap1

Chen, Y., Hu, C.

(2019) Nucleic Acids Res 47: 1573-1584

Released	2018-11-14
Method	X-RAY DIFFRACTION 2.704 Å
Organisms	Saccharomyces cerevisiae S288C Schizosaccharomyces pombe 972h-
Macromolecule	DNA-binding protein rap1 (protein) Ubiquitin-like protein SMT3,Bouquet formation protein 4 (protein)

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5YCA \| pdb_00005yca	Download File View File

Crystal structure of inner membrane protein Bqt4 in complex with LEM2

Chen, Y., Hu, C.

(2019) Nucleic Acids Res 47: 1573-1584

Released	2018-11-14
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Saccharomyces cerevisiae S288C Schizosaccharomyces pombe 972h-
Macromolecule	Lap-Emerin-Man domain protein 2 (protein) Ubiquitin-like protein SMT3,Bouquet formation protein 4 (protein)

1 to 25 of 109 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ZY4 | pdb_00001zy4

1ZY5 | pdb_00001zy5

2MYN | pdb_00002myn

2MYP | pdb_00002myp

2MYT | pdb_00002myt

2MYU | pdb_00002myu

3M95 | pdb_00003m95

4GES | pdb_00004ges

4GF6 | pdb_00004gf6

4JFG | pdb_00004jfg

4QLA | pdb_00004qla

4WD5 | pdb_00004wd5

4ZSE | pdb_00004zse

5F59 | pdb_00005f59

5F5E | pdb_00005f5e

5F6K | pdb_00005f6k

5F6L | pdb_00005f6l

5GNK | pdb_00005gnk

5GTY | pdb_00005gty

5HU9 | pdb_00005hu9

5WQD | pdb_00005wqd

5XYF | pdb_00005xyf

5YBX | pdb_00005ybx

5YC2 | pdb_00005yc2

5YCA | pdb_00005yca