Ligand validation:8SKB


NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE

NAD is a Ligand Of Interest in 8SKB designated by the Author


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter8SKB_NAD_C_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter8SKB_NAD_C_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter8SKB_NAD_C_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
8SKB_NAD_C_401 73% 1% 0.135 0.9625.13 2.63 14 1210100%1
8SKB_NAD_A_401 71% 1% 0.145 0.9665.12 2.62 14 1110100%1
8SKB_NAD_D_401 71% 1% 0.145 0.9665.1 2.64 15 1110100%1
8SKB_NAD_B_401 60% 1% 0.164 0.9495.16 2.63 15 1120100%1
8SG0_NAD_B_401 96% 6% 0.065 0.9753.58 1.57 19 610100%1
3CMC_NAD_R_408 100% 20% 0.016 0.9981.63 1.74 4 900100%1
4RQU_NAD_B_403 100% 3% 0.019 0.9973.51 2.61 13 18 00100%1
3EC7_NAD_A_400 100% 18% 0.025 0.9951.8 1.74 5 810100%1
4URF_NAD_A_1249 100% 44% 0.034 0.9950.96 1.2 2 400100%1
2C5A_NAD_B_1374 100% 23% 0.039 0.9921.34 1.84 6 710100%1