XYP: beta-D-xylopyranose
XYP is a Ligand Of Interest in 4PN2 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
4PN2_XYP_B_403 | 88% | 47% | 0.065 | 0.958 | 0.6 | 1.43 | - | 2 | 0 | 0 | 90% | 0.9 |
4PN2_XYP_A_403 | 79% | 36% | 0.072 | 0.936 | 0.65 | 1.85 | - | 2 | 3 | 0 | 90% | 0.9 |
4PN2_XYP_B_402 | 56% | 24% | 0.157 | 0.929 | 1.44 | 1.67 | 2 | 3 | 0 | 0 | 100% | 1 |
4PN2_XYP_A_402 | 51% | 13% | 0.165 | 0.921 | 1.57 | 2.35 | 3 | 7 | 0 | 0 | 100% | 1 |
4PN2_XYP_A_404 | 47% | 22% | 0.117 | 0.872 | 0.96 | 2.23 | - | 4 | 3 | 0 | 90% | 0.9 |
4PN2_XYP_B_404 | 45% | 12% | 0.114 | 0.86 | 1.18 | 2.81 | 2 | 4 | 0 | 0 | 90% | 0.9 |
4PMY_XYP_A_401 | 99% | 73% | 0.051 | 0.979 | 0.49 | 0.57 | - | - | 0 | 0 | 100% | 1 |
1OD8_XYP_A_1311 | 100% | 64% | 0.047 | 0.992 | 0.75 | 0.64 | - | - | 0 | 0 | 100% | 1 |
1V0M_XYP_A_1304 | 100% | 71% | 0.035 | 0.993 | 0.82 | 0.33 | - | - | 0 | 0 | 90% | 0.9 |
8Y00_XYP_D_201 | 99% | 28% | 0.032 | 0.986 | 0.63 | 2.19 | - | 7 | 1 | 0 | 90% | 0.9 |
2WYS_XYP_A_1001 | 99% | 38% | 0.052 | 0.983 | 0.69 | 1.7 | - | 4 | 3 | 0 | 100% | 1 |
1V0N_XYP_A_1306 | 98% | 60% | 0.048 | 0.989 | 0.76 | 0.78 | - | - | 0 | 0 | 90% | 0.9 |