Ligand validation:4D43


NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

NAP is a Ligand Of Interest in 4D43 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4D43_NAP_E_1258Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4D43_NAP_E_1258Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4D43_NAP_E_1258Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4D43_NAP_E_1258 94% 17% 0.082 0.981.84 1.76 7 500100%1
4D43_NAP_B_1258 92% 23% 0.089 0.9811.52 1.64 4 910100%1
4D43_NAP_F_1258 91% 18% 0.096 0.9841.63 1.9 4 1110100%1
4D43_NAP_G_1259 91% 21% 0.091 0.9781.62 1.69 4 1110100%1
4D43_NAP_C_1258 90% 22% 0.094 0.9781.69 1.57 4 1110100%1
4D43_NAP_H_1257 90% 16% 0.089 0.9711.77 1.95 6 900100%1
4D43_NAP_D_1257 90% 16% 0.09 0.9711.76 1.94 6 910100%1
4D43_NAP_A_1258 85% 20% 0.117 0.9821.63 1.73 3 810100%1
4ALK_NAP_A_400 98% 17% 0.064 0.991.65 1.96 6 700100%1
4D44_NAP_G_400 96% 20% 0.076 0.9851.5 1.85 5 900100%1
4BNH_NAP_B_1257 95% 23% 0.081 0.9871.63 1.54 4 810100%1
4ALI_NAP_F_1257 95% 22% 0.082 0.9871.5 1.76 4 600100%1
4D42_NAP_H_1257 95% 24% 0.071 0.9751.6 1.54 3 1020100%1
2DBQ_NAP_A_401 100% 24% 0.017 0.9981.42 1.71 7 1600100%1
2EXX_NAP_A_3698 100% 10% 0.025 0.9961.63 2.7 7 18 90100%1
2X9G_NAP_B_1269 100% 46% 0.031 0.9970.96 1.14 1 500100%1
2J8T_NAP_A_1316 100% 49% 0.033 0.9960.97 1.01 3 210100%1
3LQL_NAP_A_500 100% 43% 0.035 0.9961.13 1.07 3 410100%1