7K7B
Crystal structure of diphtheria toxin from crystals obtained at pH 5.0
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Diphtheria_R | e7k7bA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Diphtheria_R | ECOD (1.6) |
A | Diphtheria_T | e7k7bA1 | A: alpha arrays | X: Toxins' membrane translocation domains | H: Diphtheria toxin, middle domain (From Topology) | T: Diphtheria toxin, middle domain | F: Diphtheria_T | ECOD (1.6) |
A | Diphtheria_C | e7k7bA3 | A: a+b complex topology | X: ADP-ribosylation (From Topology) | H: ADP-ribosylation (From Topology) | T: ADP-ribosylation | F: Diphtheria_C | ECOD (1.6) |
B | Diphtheria_R | e7k7bB3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Diphtheria_R | ECOD (1.6) |
B | Diphtheria_T | e7k7bB1 | A: alpha arrays | X: Toxins' membrane translocation domains | H: Diphtheria toxin, middle domain (From Topology) | T: Diphtheria toxin, middle domain | F: Diphtheria_T | ECOD (1.6) |
B | Diphtheria_C | e7k7bB2 | A: a+b complex topology | X: ADP-ribosylation (From Topology) | H: ADP-ribosylation (From Topology) | T: ADP-ribosylation | F: Diphtheria_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02764 | Diphtheria toxin, T domain (Diphtheria_T) | Diphtheria toxin, T domain | Central domain of diphtheria toxin is the translocation (T) domain. pH induced conformational change in this domain triggers insertion into the endosomal membrane and facilitates the transfer of the catalytic domain into the cytoplasm. | Domain | |
PF01324 | Diphtheria toxin, R domain (Diphtheria_R) | Diphtheria toxin, R domain | C-terminal receptor binding (R) domain - binds to cell surface receptor, permitting the toxin to enter the cell by receptor mediated endocytosis. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Diphtheria toxin | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036799 | Diphtheria toxin, receptor-binding domain superfamily | Homologous Superfamily | |
IPR000512 | Diphtheria toxin (NAD+-dipthamide ADP-ribosyltransferase) | Family | |
IPR022404 | Diphtheria toxin, receptor-binding domain | Domain | |
IPR036801 | Diphtheria toxin, translocation domain superfamily | Homologous Superfamily | |
IPR022406 | Diphtheria toxin, catalytic domain | Domain |