7K00

Structure of the Bacterial Ribosome at 2 Angstrom Resolution


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063838 3001397 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyAlpha-L RNA-binding motif 8083400 3001473 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRibosomal protein S7 8077979 3000799 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRibosomal protein S8 8079059 3000709 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082661 3000100 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRibosomal protein S10 8102681 3001336 SCOP2B (2022-06-29)
KSCOP2 FamilyRibosomal protein L18p and S11 8100803 4000555 SCOP2 (2022-06-29)
KSCOP2 SuperfamilyTranslational machinery components 8100804 3000571 SCOP2 (2022-06-29)
KSCOP2B SuperfamilyTranslational machinery components 8035368 3000571 SCOP2B (2022-06-29)
LSCOP2 FamilyCold shock DNA-binding domain-like 8097931 4001909 SCOP2 (2022-06-29)
LSCOP2 SuperfamilyNucleic acid-binding proteins 8097932 3000135 SCOP2 (2022-06-29)
LSCOP2B SuperfamilyNucleic acid-binding proteins 8106545 3000135 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyS13-like H2TH domain 8098358 3000053 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052568 3000068 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyS15/NS1 RNA-binding domain 8032375 3001284 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyRibosomal protein S16 8106547 3000680 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyNucleic acid-binding proteins 8059276 3000135 SCOP2B (2022-06-29)
USCOP2B SuperfamilyRibosomal protein S21 8053090 3002159 SCOP2B (2022-06-29)
X [auth c]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
X [auth c]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
Z [auth e]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
AA [auth f]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
BA [auth g]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
BA [auth g]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
DA [auth i]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
EA [auth j]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
FA [auth k]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
GA [auth l]SCOP2 FamilyRibosomal protein L16p 8098041 4003717 SCOP2 (2022-06-29)
GA [auth l]SCOP2 SuperfamilyRibosomal protein L16p/L10e 8098042 3000884 SCOP2 (2022-06-29)
GA [auth l]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096366 3000884 SCOP2B (2022-06-29)
HA [auth m]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
IA [auth n]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
JA [auth o]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
KA [auth p]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
LA [auth q]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
MA [auth r]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
NA [auth s]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
OA [auth t]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
PA [auth u]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
QA [auth v]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
RA [auth w]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
SA [auth x]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
TA [auth y]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
UA [auth z]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
VA [auth 0]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)
XA [auth 2]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
YA [auth 3]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
ZA [auth 4]SCOP2B SuperfamilyL28p-like 8032740 3001966 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyRibosomal protein S19 8103915 3000686 SCOP2B (2022-06-29)
Y [auth d]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRibosomal_S2e7k00B1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
CRibosomal_S3_Ce7k00C2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
CKH_2_1e7k00C1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
DS4e7k00D1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
ERibosomal_S5_Ce7k00E1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
ERibosomal_S5e7k00E2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
FRibosomal_S6e7k00F1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
GRibosomal_S7_1e7k00G1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
HRibosomal_S8_Ne7k00H1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
HRibosomal_S8_Ce7k00H2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
IRibosomal_S9e7k00I1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
JRibosomal_S10e7k00J1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
KRibosomal_S11e7k00K1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
LRibosom_S12_S23e7k00L1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
MRibosomal_S13_1e7k00M1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
NRibosomal_S14_1e7k00N1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
ORibosomal_S15_1e7k00O1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
PRibosomal_S16e7k00P1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16ECOD (1.6)
QRibosomal_S17_1e7k00Q1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
RRibosomal_S18e7k00R1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
TRibosomal_S20pe7k00T1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
URibosomal_S21e7k00U1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: Ribosomal_S21ECOD (1.6)
X [auth c]Ribosomal_L2_1e7k00c1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
X [auth c]Ribosomal_L2_Ce7k00c2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
Z [auth e]Ribosomal_L4e7k00e1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
AA [auth f]Ribosomal_L5_Ce7k00f1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
BA [auth g]Ribosomal_L6e7k00g1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
BA [auth g]Ribosomal_L6_1e7k00g2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
CA [auth h]Ribosomal_L9_Ne7k00h1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
DA [auth i]Ribosomal_L13e7k00i1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
EA [auth j]Ribosomal_L14e7k00j1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
FA [auth k]Ribosomal_L27Ae7k00k1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
GA [auth l]Ribosomal_L16e7k00l1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
HA [auth m]Ribosomal_L17_1e7k00m1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
IA [auth n]Ribosomal_L18pe7k00n1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
JA [auth o]Ribosomal_L19e7k00o1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
KA [auth p]Ribosomal_L20e7k00p1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
LA [auth q]Ribosomal_L21pe7k00q1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
MA [auth r]Ribosomal_L22e7k00r1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
NA [auth s]Ribosomal_L23_2e7k00s1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
OA [auth t]ribosomal_L24_1e7k00t1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
PA [auth u]Ribosomal_L25pe7k00u1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
QA [auth v]Ribosomal_L27e7k00v1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
RA [auth w]Ribosomal_L28e7k00w1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
SA [auth x]Ribosomal_L29e7k00x1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
TA [auth y]Ribosomal_L30e7k00y1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
UA [auth z]Ribosomal_L32pe7k00z1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
VA [auth 0]Ribosomal_L33e7k0001 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
WA [auth 1]Ribosomal_L34e7k0011 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
XA [auth 2]Ribosomal_L35pe7k0021 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
YA [auth 3]Ribosomal_L36e7k0031 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
ZA [auth 4]Ribosomal_L31e7k0041 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
SRibosomal_S19e7k00S1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
Y [auth d]Ribosomal_L3e7k00d1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF07650KH domain (KH_2)KH domain- Domain
PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
PF00467KOW motif (KOW)KOW motif- Family
PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
VA [auth 0]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
WA [auth 1]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
XA [auth 2]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
YA [auth 3]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
ZA [auth 4]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
AB [auth X]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
BB [auth Y]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
CB [auth Z]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
16S rRNA---
30S ribosomal protein S2
30S ribosomal protein S3
30S ribosomal protein S4
30S ribosomal protein S5
30S ribosomal protein S6
30S ribosomal protein S7
30S ribosomal protein S8
30S ribosomal protein S9
30S ribosomal protein S10
30S ribosomal protein S11
30S ribosomal protein S12
30S ribosomal protein S13
30S ribosomal protein S14
30S ribosomal protein S15
30S ribosomal protein S16
30S ribosomal protein S17
30S ribosomal protein S18
30S ribosomal protein S20
30S ribosomal protein S21
V [auth a]23S rRNA---
W [auth b]5S rRNA---
X [auth c]50S ribosomal protein L2
Z [auth e]50S ribosomal protein L4
AA [auth f]50S ribosomal protein L5
BA [auth g]50S ribosomal protein L6
CA [auth h]50S ribosomal protein L9
DA [auth i]50S ribosomal protein L13
EA [auth j]50S ribosomal protein L14
FA [auth k]50S ribosomal protein L15
GA [auth l]50S ribosomal protein L16
HA [auth m]50S ribosomal protein L17
IA [auth n]50S ribosomal protein L18
JA [auth o]50S ribosomal protein L19
KA [auth p]50S ribosomal protein L20
LA [auth q]50S ribosomal protein L21
MA [auth r]50S ribosomal protein L22
NA [auth s]50S ribosomal protein L23
OA [auth t]50S ribosomal protein L24
PA [auth u]50S ribosomal protein L25
QA [auth v]50S ribosomal protein L27
RA [auth w]50S ribosomal protein L28
SA [auth x]50S ribosomal protein L29
TA [auth y]50S ribosomal protein L30
UA [auth z]50S ribosomal protein L32
VA [auth 0]50S ribosomal protein L33
WA [auth 1]50S ribosomal protein L34
XA [auth 2]50S ribosomal protein L35
YA [auth 3]50S ribosomal protein L36
ZA [auth 4]50S ribosomal protein L31
AB [auth X]mRNA---
BB [auth Y]A-site tRNA-val---
CB [auth Z]P-site tRNA-fMet---
DB [auth 5]E-site tRNA---
30S ribosomal protein S19
Y [auth d]50S ribosomal protein L3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
IPR001865Small ribosomal subunit protein uS2Family
IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
IPR004087K Homology domainDomain
IPR004044K Homology domain, type 2Domain
IPR015946K homology domain-like, alpha/betaHomologous Superfamily
IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
IPR002942RNA-binding S4 domainDomain
IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
IPR022801Small ribosomal subunit protein uS4Family
IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IPR000851Small ribosomal subunit protein uS5Family
IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
IPR000529Small ribosomal subunit protein bS6Family
IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
IPR000235Small ribosomal subunit protein uS7Family
IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
IPR023798Small ribosomal subunit protein uS7 domainDomain
IPR000630Small ribosomal subunit protein uS8Family
IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR000754Small ribosomal subunit protein uS9Family
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IPR027486Small ribosomal subunit protein uS10 domainDomain
IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
IPR001848Small ribosomal subunit protein uS10Family
IPR001971Small ribosomal subunit protein uS11Family
IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
IPR005679Ribosomal protein uS12, bacterial-typeFamily
IPR006032Small ribosomal subunit protein uS12Family
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
IPR001892Small ribosomal subunit protein uS13Family
IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
IPR001209Small ribosomal subunit protein uS14Family
IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
IPR000589Small ribosomal subunit protein uS15Family
IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
IPR000307Small ribosomal subunit protein bS16Family
IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR000266Small ribosomal subunit protein uS17Family
IPR001648Small ribosomal subunit protein bS18Family
IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
IPR002583Small ribosomal subunit protein bS20Family
IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
IPR001911Small ribosomal subunit protein bS21Family
X [auth c]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
X [auth c]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth c]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth c]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
X [auth c]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
X [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
X [auth c]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
X [auth c]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
X [auth c]IPR002171Large ribosomal subunit protein uL2Family
Z [auth e]IPR013005Large ribosomal subunit protein uL4-likeFamily
Z [auth e]IPR002136Large ribosomal subunit protein uL4Family
Z [auth e]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
AA [auth f]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
AA [auth f]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
AA [auth f]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
AA [auth f]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
AA [auth f]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
AA [auth f]IPR002132Large ribosomal subunit protein uL5Family
BA [auth g]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
BA [auth g]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
BA [auth g]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
BA [auth g]IPR000702Large ribosomal subunit protein uL6-likeFamily
BA [auth g]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
CA [auth h]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
CA [auth h]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
CA [auth h]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
CA [auth h]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
CA [auth h]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
CA [auth h]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
CA [auth h]IPR000244Large ribosomal subunit protein bL9Family
DA [auth i]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
DA [auth i]IPR005822Large ribosomal subunit protein uL13Family
DA [auth i]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
DA [auth i]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
EA [auth j]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
EA [auth j]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
EA [auth j]IPR000218Large ribosomal subunit protein uL14Family
EA [auth j]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
FA [auth k]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
FA [auth k]IPR021131Large ribosomal subunit protein uL15/eL18Domain
FA [auth k]IPR030878Large ribosomal subunit protein uL15Family
FA [auth k]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
FA [auth k]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
GA [auth l]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
GA [auth l]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
GA [auth l]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
GA [auth l]IPR016180Large ribosomal subunit protein uL16 domainDomain
GA [auth l]IPR047873Large ribosomal subunit protein uL16Family
HA [auth m]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
HA [auth m]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
HA [auth m]IPR000456Large ribosomal subunit protein bL17Family
IA [auth n]IPR005484Large ribosomal subunit protein uL18Family
IA [auth n]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
JA [auth o]IPR001857Large ribosomal subunit protein bL19Family
JA [auth o]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
JA [auth o]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
JA [auth o]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
KA [auth p]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
KA [auth p]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
KA [auth p]IPR005813Large ribosomal subunit protein bL20Family
LA [auth q]IPR028909Large ribosomal subunit protein bL21-likeFamily
LA [auth q]IPR001787Large ribosomal subunit protein bL21Family
LA [auth q]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
LA [auth q]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
MA [auth r]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
MA [auth r]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
MA [auth r]IPR001063Large ribosomal subunit protein uL22Family
MA [auth r]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
MA [auth r]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
NA [auth s]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
NA [auth s]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
NA [auth s]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
NA [auth s]IPR013025Large ribosomal subunit protein uL23-likeFamily
OA [auth t]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
OA [auth t]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
OA [auth t]IPR003256Large ribosomal subunit protein uL24Family
OA [auth t]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
OA [auth t]IPR005824KOWDomain
OA [auth t]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
PA [auth u]IPR020055Ribosomal protein bL25, short-formFamily
PA [auth u]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
PA [auth u]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
PA [auth u]IPR050070Bacterial ribosomal protein bL25Family
PA [auth u]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
QA [auth v]IPR001684Large ribosomal subunit protein bL27Family
QA [auth v]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
RA [auth w]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
RA [auth w]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
RA [auth w]IPR026569Large ribosomal subunit protein bL28Family
RA [auth w]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
SA [auth x]IPR050063Universal ribosomal protein uL29Family
SA [auth x]IPR001854Large ribosomal subunit protein uL29Family
SA [auth x]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
SA [auth x]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
TA [auth y]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
TA [auth y]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
TA [auth y]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
TA [auth y]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
UA [auth z]IPR002677Large ribosomal subunit protein bL32Family
UA [auth z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
UA [auth z]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
VA [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
VA [auth 0]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
VA [auth 0]IPR001705Large ribosomal subunit protein bL33Family
VA [auth 0]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
WA [auth 1]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
WA [auth 1]IPR000271Large ribosomal subunit protein bL34Family
XA [auth 2]IPR021137Large ribosomal subunit protein bL35-likeFamily
XA [auth 2]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
XA [auth 2]IPR001706Large ribosomal subunit protein bL35Family
XA [auth 2]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
YA [auth 3]IPR000473Large ribosomal subunit protein bL36Family
YA [auth 3]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
ZA [auth 4]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
ZA [auth 4]IPR027491Large ribosomal subunit protein bL31 type AFamily
ZA [auth 4]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
ZA [auth 4]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
IPR002222Small ribosomal subunit protein uS19Family
IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
Y [auth d]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
Y [auth d]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
Y [auth d]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
Y [auth d]IPR000597Large ribosomal subunit protein uL3Family

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
2MG Parent Component: G

4OC Parent Component: C

5MC Parent Component: C

G7M Parent Component: G

MA6 Parent Component: A

PSU Parent Component: U

UR3 Parent Component: U

IAS
D2T Parent Component: ASP

V [auth a]1MG Parent Component: G

V [auth a]2MA Parent Component: A

V [auth a]2MG Parent Component: G

V [auth a]3TD Parent Component: U

V [auth a]5MC Parent Component: C

V [auth a]5MU Parent Component: U

V [auth a]6MZ Parent Component: A

V [auth a]G7M Parent Component: G

V [auth a]H2U Parent Component: U

V [auth a]OMC Parent Component: C

V [auth a]OMG Parent Component: G

V [auth a]OMU Parent Component: U

V [auth a]PSU Parent Component: U

GA [auth l]4D4 Parent Component: ARG

GA [auth l]MS6
Y [auth d]MEQ Parent Component: GLN

RESIDAA0071

PSI-MOD :  N5-methyl-L-glutamine MOD:00080