5T6L
Crystal structure of 10E8 Fab in complex with the MPER epitope scaffold T117v2
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth H] | C1-set_1 | e5t6lH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
A [auth H] | V-set_12 | e5t6lH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
C [auth A] | C1-set_1 | e5t6lA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
C [auth A] | V-set_12 | e5t6lA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
E [auth G] | PTS_EIIA_2 | e5t6lG1 | A: a+b three layers | X: Phoshotransferase/anion transport protein (From Topology) | H: Phoshotransferase/anion transport protein (From Topology) | T: Phoshotransferase/anion transport protein | F: PTS_EIIA_2 | ECOD (1.6) |
F [auth I] | PTS_EIIA_2 | e5t6lI1 | A: a+b three layers | X: Phoshotransferase/anion transport protein (From Topology) | H: Phoshotransferase/anion transport protein (From Topology) | T: Phoshotransferase/anion transport protein | F: PTS_EIIA_2 | ECOD (1.6) |
B [auth L] | C1-set | e5t6lL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
B [auth L] | V-set_3 | e5t6lL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
D [auth B] | C1-set | e5t6lB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
D [auth B] | V-set_3 | e5t6lB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C [auth A] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
E [auth G] | 3.40.930.10 | Alpha Beta | 3-Layer(aba) Sandwich | Mannitol-specific EII | Chain A | CATH (4.3.0) |
F [auth I] | 3.40.930.10 | Alpha Beta | 3-Layer(aba) Sandwich | Mannitol-specific EII | Chain A | CATH (4.3.0) |
B [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D [auth B] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth H], C [auth A] | Fab 10E8, broadly neutralizing | VH-CH1 | Homo sapiens (human) | IGHV3-15*01, IGHV3-15*04, IGHV3-15*05, IGHV3-15*07, IGHJ1*01, IGHG1*03, IGHG1*08, IGHG1*06 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_LAMBDA | IMGT (202448-0) |
B [auth L], D [auth B] | Fab 10E8, broadly neutralizing | L-LAMBDA | Homo sapiens (human) | IGLV3-19*01, IGLJ2*01, IGLJ3*02, IGLJ3*01, IGLC2*01, IGLC2*02, IGLC3*04 | V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA | IG | FAB-GAMMA-1_LAMBDA | IMGT (202448-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth H], C [auth A] | Heavy Chain | IGHV3 | - | 10e8 epitope scaffold t117v2 | SAbDab (2024-12-06) |
B [auth L], D [auth B] | Light Chain | IGLV3 | Lambda | 10e8 epitope scaffold t117v2 | SAbDab (2024-12-06) |