5NH7
Crystal structure of xylose isomerase from Piromyces E2 in complex with two Mg2+ ions and xylose
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d5nh7c_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Xylose isomerase-like | automated matches | automated matches | (Piromyces sp. E2 ) [TaxId: 73868 ], | SCOPe (2.08) |
A | d5nh7a_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Xylose isomerase-like | automated matches | automated matches | (Piromyces sp. E2 ) [TaxId: 73868 ], | SCOPe (2.08) |
B | d5nh7b_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Xylose isomerase-like | automated matches | automated matches | (Piromyces sp. E2 ) [TaxId: 73868 ], | SCOPe (2.08) |
D | d5nh7d_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Xylose isomerase-like | automated matches | automated matches | (Piromyces sp. E2 ) [TaxId: 73868 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | Xylose isomerase-like | 8078202 | 3000560 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Xylose isomerase-like | 8078202 | 3000560 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Xylose isomerase-like | 8078202 | 3000560 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Xylose isomerase-like | 8078202 | 3000560 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | AP_endonuc_2 | e5nh7C1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: AP_endonuc_2 | ECOD (1.6) |
A | AP_endonuc_2 | e5nh7A1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: AP_endonuc_2 | ECOD (1.6) |
B | AP_endonuc_2 | e5nh7B1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: AP_endonuc_2 | ECOD (1.6) |
D | AP_endonuc_2 | e5nh7D1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: AP_endonuc_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 3.20.20.150 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Divalent-metal-dependent TIM barrel enzymes | CATH (4.3.0) |
A | 3.20.20.150 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Divalent-metal-dependent TIM barrel enzymes | CATH (4.3.0) |
B | 3.20.20.150 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Divalent-metal-dependent TIM barrel enzymes | CATH (4.3.0) |
D | 3.20.20.150 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Divalent-metal-dependent TIM barrel enzymes | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01261 | Xylose isomerase-like TIM barrel (AP_endonuc_2) | Xylose isomerase-like TIM barrel | This TIM alpha/beta barrel structure is found in xylose isomerase (Swiss:P19148) and in endonuclease IV (Swiss:P12638, EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the ... | Domain |