X-ray structure of the entire lipid-containing bacteriophage PM2
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | EUF07642 | e2w0cA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07642 | ECOD (1.6) |
| A | EUF07643 | e2w0cA2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07643 | ECOD (1.6) |
| D | EUF07642 | e2w0cD1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07642 | ECOD (1.6) |
| D | EUF07643 | e2w0cD2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07643 | ECOD (1.6) |
| E | EUF07642 | e2w0cE1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07642 | ECOD (1.6) |
| E | EUF07643 | e2w0cE2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07643 | ECOD (1.6) |
| I | EUF07642 | e2w0cI1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07642 | ECOD (1.6) |
| I | EUF07643 | e2w0cI2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07643 | ECOD (1.6) |
| J | EUF07642 | e2w0cJ1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07642 | ECOD (1.6) |
| J | EUF07643 | e2w0cJ2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07643 | ECOD (1.6) |
| B | EUF07642 | e2w0cB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07642 | ECOD (1.6) |
| B | EUF07643 | e2w0cB2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07643 | ECOD (1.6) |
| C | EUF07642 | e2w0cC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07642 | ECOD (1.6) |
| C | EUF07643 | e2w0cC2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07643 | ECOD (1.6) |
| F | EUF07642 | e2w0cF1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07642 | ECOD (1.6) |
| F | EUF07643 | e2w0cF2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07643 | ECOD (1.6) |
| G | EUF07642 | e2w0cG1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07642 | ECOD (1.6) |
| G | EUF07643 | e2w0cG2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07643 | ECOD (1.6) |
| H | EUF07642 | e2w0cH1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07642 | ECOD (1.6) |
| H | EUF07643 | e2w0cH2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07643 | ECOD (1.6) |
| K [auth L] | EUF07644 | e2w0cL3 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07644 | ECOD (1.6) |
| K [auth L] | EUF07645 | e2w0cL2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07645 | ECOD (1.6) |
| K [auth L] | EUF07646 | e2w0cL1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07646 | ECOD (1.6) |
| M [auth Q] | EUF08771 | e2w0cQ1 | A: extended segments | X: Viral membrane protein P3 (From Topology) | H: Viral membrane protein P3 (From Topology) | T: Viral membrane protein P3 | F: EUF08771 | ECOD (1.6) |
| L [auth P] | EUF08771 | e2w0cP1 | A: extended segments | X: Viral membrane protein P3 (From Topology) | H: Viral membrane protein P3 (From Topology) | T: Viral membrane protein P3 | F: EUF08771 | ECOD (1.6) |
| N [auth R] | EUF08771 | e2w0cR1 | A: extended segments | X: Viral membrane protein P3 (From Topology) | H: Viral membrane protein P3 (From Topology) | T: Viral membrane protein P3 | F: EUF08771 | ECOD (1.6) |
| O [auth S] | EUF08771 | e2w0cS1 | A: extended segments | X: Viral membrane protein P3 (From Topology) | H: Viral membrane protein P3 (From Topology) | T: Viral membrane protein P3 | F: EUF08771 | ECOD (1.6) |
| P [auth T] | EUF08772 | e2w0cT1 | A: extended segments | X: Viral membrane protein P6 (From Topology) | H: Viral membrane protein P6 (From Topology) | T: Viral membrane protein P6 | F: EUF08772 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF18628 | Viral coat protein P2 N-terminal domain (P2_N) | Viral coat protein P2 N-terminal domain | P2 (30.2 kDa) is the major outer-coat protein of the marine lipid-containing bacteriophage PM2. Each sub-unit of P2 is composed of two beta barrel jelly rolls, disposed normal to the surface of the capsid, which lend pseudo-6-fold symmetry to the mol ... | Domain | |
| K [auth L] | PF22465 | Spike protein P1, second jelly-roll domain (Spike_JR2) | Spike protein P1, second jelly-roll domain | This entry represents the second jelly-roll domain of Spike protein P1 from Pseudoalteromonas phage PM2 [1]. | Domain |
| K [auth L] | PF22464 | Spike protein P1, first jelly-roll domain (Spike_JR1) | Spike protein P1, first jelly-roll domain | This entry represents the first jelly-roll domain of Spike protein P1 from Pseudoalteromonas phage PM2 [1]. | Domain |
| K [auth L] | PF22188 | Phage PM2 spike protein P1 (Phage_spike_P1) | Phage PM2 spike protein P1 | The spike protein P1, also known as Protein I, is a key component of the Pseudoalteromonas phage PM2 (Bacteriophage PM2). This protein is responsible for receptor binding and is located at the fivefold vertices of the viral capsid. It plays a crucial ... | Domain |
| L [auth P], M [auth Q], N [auth R], O [auth S] | PF20812 | Bacteriophage PM2, Viral membrane protein P3 (PM2_P3) | Bacteriophage PM2, Viral membrane protein P3 | Viral membrane protein P3 assemblies into dimers. Each P3 subunit comprise a core of two perpendicular alpha helices, and subunits are bound together by a parallel two-stranded beta sheet. 120 asymmetric dimers form a layer below the outer capsid ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| MAJOR CAPSID PROTEIN P2 | - | - | ||
| K [auth L] | PROTEIN 2 | - | - | |
| L [auth P], M [auth Q], N [auth R], O [auth S] | PROTEIN P3 | - | - | |
| P [auth T] | PROTEIN P6 | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR053751 | Viral Major Capsid Assembly | Homologous Superfamily | |
| IPR041377 | Viral coat protein P2, N-terminal | Domain | |
| L [auth P], M [auth Q], N [auth R], O [auth S] | IPR048973 | Bacteriophage PM2 P3 protein-like | Family |
