2BA0
Archaeal exosome core
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
G [auth I] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8033526 | 3000100 | SCOP2B (2022-06-29) |
G [auth I] | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8033527 | 3000346 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8033527 | 3000346 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8033526 | 3000100 | SCOP2B (2022-06-29) |
I [auth G] | SCOP2 Family | Ribonuclease PH domain 1-like | 8021146 | 4000958 | SCOP2 (2022-06-29) |
I [auth G] | SCOP2 Family | Ribonuclease PH domain 2-like | 8021147 | 4001767 | SCOP2 (2022-06-29) |
I [auth G] | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8033526 | 3000100 | SCOP2 (2022-06-29) |
I [auth G] | SCOP2 Superfamily | Ribonuclease PH domain 2-like | 8033527 | 3000346 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Cold shock DNA-binding domain-like | 8021140 | 4001909 | SCOP2 (2022-06-29) |
A | SCOP2 Family | ECR1 N-terminal domain-like | 8021142 | 4001938 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Eukaryotic type KH-domain (KH-domain type I) | 8021144 | 4001190 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Nucleic acid-binding proteins | 8033520 | 3000135 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ribosomal L27 protein-like | 8033522 | 3000539 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Eukaryotic type KH-domain (KH-domain type I) | 8033524 | 3001023 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Ribosomal L27 protein-like | 8033522 | 3000539 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Eukaryotic type KH-domain (KH-domain type I) | 8033524 | 3001023 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Nucleic acid-binding proteins | 8033520 | 3000135 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Nucleic acid-binding proteins | 8033520 | 3000135 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ribosomal L27 protein-like | 8033522 | 3000539 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Eukaryotic type KH-domain (KH-domain type I) | 8033524 | 3001023 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8033521 | 3000346 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8033518 | 3000100 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8033518 | 3000100 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ribonuclease PH domain 2-like | 8033521 | 3000346 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2 Family | Ribonuclease PH domain 1-like | 8021138 | 4000958 | SCOP2 (2022-06-29) |
F [auth D] | SCOP2 Family | Ribonuclease PH domain 2-like | 8021141 | 4001767 | SCOP2 (2022-06-29) |
F [auth D] | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8033518 | 3000100 | SCOP2 (2022-06-29) |
F [auth D] | SCOP2 Superfamily | Ribonuclease PH domain 2-like | 8033521 | 3000346 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
G [auth I] | RNase_PH_2 | e2ba0I4 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
G [auth I] | RNase_PH_C_1 | e2ba0I3 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
H | RNase_PH_2 | e2ba0H2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
H | RNase_PH_C_1 | e2ba0H1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
I [auth G] | RNase_PH_2 | e2ba0G2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
I [auth G] | RNase_PH_C_1 | e2ba0G1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
A | S1_5 | e2ba0A1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1_5 | ECOD (1.6) |
A | KH_6_2 | e2ba0A2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Eukaryotic type KH-domain (KH-domain type I) | F: KH_6_2 | ECOD (1.6) |
A | ECR1_N_2 | e2ba0A3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N_2 | ECOD (1.6) |
B | S1_5 | e2ba0B1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1_5 | ECOD (1.6) |
B | KH_6_2 | e2ba0B2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Eukaryotic type KH-domain (KH-domain type I) | F: KH_6_2 | ECOD (1.6) |
B | ECR1_N_2 | e2ba0B3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N_2 | ECOD (1.6) |
C | S1_5 | e2ba0C1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1_5 | ECOD (1.6) |
C | KH_6_2 | e2ba0C2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Eukaryotic type KH-domain (KH-domain type I) | F: KH_6_2 | ECOD (1.6) |
C | ECR1_N_2 | e2ba0C3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N_2 | ECOD (1.6) |
D [auth F] | RNase_PH | e2ba0F2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
D [auth F] | RNase_PH_C_3 | e2ba0F1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
E | RNase_PH | e2ba0E2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
E | RNase_PH_C_3 | e2ba0E1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
F [auth D] | RNase_PH | e2ba0D2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
F [auth D] | RNase_PH_C_3 | e2ba0D1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
G [auth I], H, I [auth G] | PF03725 | 3' exoribonuclease family, domain 2 (RNase_PH_C) | 3' exoribonuclease family, domain 2 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
G [auth I], H, I [auth G] | PF01138 | 3' exoribonuclease family, domain 1 (RNase_PH) | 3' exoribonuclease family, domain 1 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
PF21266 | RRP4, S1 domain (RRP4_S1) | RRP4, S1 domain | Exosome complex component RRP4 is a non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. It consists of a N-terminal beta-sandw ... | Domain | |
PF00013 | KH domain (KH_1) | KH domain | KH motifs bind RNA in vitro. Autoantibodies to Nova, a KH domain protein, cause paraneoplastic opsoclonus ataxia. | Domain | |
PF22625 | Exosome RNA binding protein RRP4 N-terminal domain (ECR1_N_2) | Exosome RNA binding protein RRP4 N-terminal domain | This domain is found N-terminal in exosome RNA binding protein RRP4 and related proteins [1-5]. RRP4 is a part of the exosome regulatory substrate recognition platform. This domain is structurally similar to ribosomal L27 protein. | Domain | |
D [auth F], E, F [auth D] | PF03725 | 3' exoribonuclease family, domain 2 (RNase_PH_C) | 3' exoribonuclease family, domain 2 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
D [auth F], E, F [auth D] | PF01138 | 3' exoribonuclease family, domain 1 (RNase_PH) | 3' exoribonuclease family, domain 1 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |