Download MendeleyCrystal Structure of the Ligated Hemoglobin D from the Aldabra Giant Tortoise, Geochelone gigantea
Kuwada, T., Hasegawa, T., Sato, I., Ishikawa, K., Shishikura, F.To be published.
2Z6N | pdb_00002z6n
Crystal Structure of Carbonmonoxy Hemoglobin D from the Aldabra Giant Tortoise, Geochelone gigantea
- PDB DOI: https://doi.org/10.2210/pdb2Z6N/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Aldabrachelys gigantea
- Mutation(s): No
- Deposited: 2007-08-04 Released: 2007-08-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.86 Å
- R-Value Free: 0.217 (Depositor), 0.210 (DCC)
- R-Value Work: 0.185 (Depositor), 0.180 (DCC)
Starting Model: experimental
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This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hemoglobin D subunit alpha | 141 | Aldabrachelys gigantea | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P83134 (Aldabrachelys gigantea) Explore P83134 Go to UniProtKB: P83134 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P83134 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hemoglobin A/D subunit beta | 146 | Aldabrachelys gigantea | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P83133 (Aldabrachelys gigantea) Explore P83133 Go to UniProtKB: P83133 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P83133 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | C [auth A], E [auth B] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | ||
| CMO Query on CMO | D [auth A], F [auth B] | CARBON MONOXIDE C O UGFAIRIUMAVXCW-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.86 Å
- R-Value Free: 0.217 (Depositor), 0.210 (DCC)
- R-Value Work: 0.185 (Depositor), 0.180 (DCC)
Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 112.355 | α = 90 |
| b = 62.104 | β = 110.22 |
| c = 53.987 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNX | refinement |
| CrystalClear | data collection |
| CrystalClear | data reduction |
| CrystalClear | data scaling |
| CNX | phasing |
Entry History
Deposition Data
- Released Date: 2007-08-28 Deposition Author(s): Kuwada, T., Hasegawa, T., Sato, I., Ishikawa, K., Shishikura, F.
Revision History (Full details and data files)
- Version 1.0: 2007-08-28
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2018-06-20
Changes: Data collection, Database references - Version 1.3: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
