Download MendeleyCrystal Structure of the Hypothetical regulator from Sulfolobus tokodaii
Kumarevel, T.S., Tanaka, T., Nishio, M., Yokoyama, S.To be published.
2YR2 | pdb_00002yr2
Crystal Structure of the Hypothetical regulator from Sulfolobus tokodaii
- PDB DOI: https://doi.org/10.2210/pdb2YR2/pdb
- Classification: TRANSCRIPTION REGULATOR
- Organism(s): Sulfurisphaera tokodaii
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-04-02 Released: 2007-10-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.01 Å
- R-Value Free: 0.279 (Depositor), 0.280 (DCC)
- R-Value Work: 0.234 (Depositor), 0.230 (DCC)
- R-Value Observed: 0.234 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 146aa long hypothetical transcriptional regulator | 146 | Sulfurisphaera tokodaii | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q96ZY1 (Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)) Explore Q96ZY1 Go to UniProtKB: Q96ZY1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q96ZY1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | C [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.01 Å
- R-Value Free: 0.279 (Depositor), 0.280 (DCC)
- R-Value Work: 0.234 (Depositor), 0.230 (DCC)
- R-Value Observed: 0.234 (Depositor)
Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 106.258 | α = 90 |
| b = 41.928 | β = 109.22 |
| c = 70.579 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| BSS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| CCP4 | phasing |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2007-10-02 Deposition Author(s): Kumarevel, T.S., Tanaka, T., Nishio, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-10-02
Type: Initial release - Version 1.1: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.2: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
