Download MendeleyCrystal structure of the protein L1841, unknown member of enolase superfamily from Bradyrhizobium japonicum
Fedorov, A.A., Fedorov, E.V., Yew, W.S., Gerlt, J.A., Almo, S.C.To be published.
1TZZ | pdb_00001tzz
Crystal structure of the protein L1841, unknown member of enolase superfamily from Bradyrhizobium japonicum
- PDB DOI: https://doi.org/10.2210/pdb1TZZ/pdb
- Classification: structural genomics, unknown function
- Organism(s): Bradyrhizobium japonicum
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-07-12 Released: 2004-10-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.86 Å
- R-Value Free: 0.254 (Depositor), 0.250 (DCC)
- R-Value Work: 0.234 (Depositor), 0.230 (DCC)
- R-Value Observed: 0.238 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein L1841 | 392 | Bradyrhizobium japonicum | Mutation(s): 0 EC: 4.2.1.81 |  | |
UniProt | |||||
Find proteins for Q89FH0 (Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)) Explore Q89FH0 Go to UniProtKB: Q89FH0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q89FH0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | C [auth A], D [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.86 Å
- R-Value Free: 0.254 (Depositor), 0.250 (DCC)
- R-Value Work: 0.234 (Depositor), 0.230 (DCC)
- R-Value Observed: 0.238 (Depositor)
Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 95.975 | α = 90 |
| b = 178.003 | β = 90 |
| c = 110.519 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SOLVE | phasing |
| CNS | refinement |
Entry History
Deposition Data
- Released Date: 2004-10-05 Deposition Author(s): Fedorov, A.A., Fedorov, E.V., Yew, W.S., Gerlt, J.A., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2004-10-05
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2024-02-14
Changes: Data collection, Database references
