Download MendeleyCrystal structure of CcGH131B, a protein belonging to glycoside hydrolase family 131 from the basidiomycete Coprinopsis cinerea
Shiojima, Y., Tonozuka, T.To be published.
9K7O
Coprinopsis cinerea GH131 protein CcGH131B
- PDB DOI: https://doi.org/10.2210/pdb9K7O/pdb
- Classification: HYDROLASE
- Organism(s): Coprinopsis cinerea okayama7#130
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2024-10-24 Released: 2024-11-06
- Funding Organization(s): Japan Society for the Promotion of Science (JSPS), Japan Science and Technology
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.216
- R-Value Work: 0.180
- R-Value Observed: 0.182
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glycoside hydrolase 131 catalytic N-terminal domain-containing protein | 313 | Coprinopsis cinerea okayama7#130 | Mutation(s): 2 Gene Names: CC1G_15039 |  | |
UniProt | |||||
Find proteins for D6RP27 (Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)) Explore D6RP27 Go to UniProtKB: D6RP27 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D6RP27 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PEG Query on PEG | C [auth A], D [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.216
- R-Value Work: 0.180
- R-Value Observed: 0.182
- Space Group: P 61
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 71.849 | α = 90 |
| b = 71.849 | β = 90 |
| c = 225.802 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| Aimless | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-11-06 Deposition Author(s): Shiojima, Y., Tonozuka, T.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Japan Society for the Promotion of Science (JSPS) | Japan | 24K08698 |
| Japan Science and Technology | Japan | JPMJSP2116 |
Revision History (Full details and data files)
- Version 1.0: 2024-11-06
Type: Initial release - Version 1.1: 2024-11-20
Changes: Database references, Structure summary
