9BCH

Solution structure of the hemoglobin receptor HbpA from Corynebacterium diphtheriae


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Molecular basis of hemoglobin binding and heme removal in Corynebacterium diphtheriae.

Mahoney, B.J.Lyman, L.R.Ford, J.Soule, J.Cheung, N.A.Goring, A.K.Ellis-Guardiola, K.Collazo, M.J.Cascio, D.Ton-That, H.Schmitt, M.P.Clubb, R.T.

(2025) Proc Natl Acad Sci U S A 122: e2411833122-e2411833122

  • DOI: https://doi.org/10.1073/pnas.2411833122
  • Primary Citation of Related Structures:  
    9BCH, 9BCJ

  • PubMed Abstract: 

    To successfully mount infections, nearly all bacterial pathogens must acquire iron, a key metal cofactor that primarily resides within human hemoglobin. Corynebacterium diphtheriae causes the life-threatening respiratory disease diphtheria and captures hemoglobin for iron scavenging using the surface-displayed receptor HbpA. Here, we show using X-ray crystallography, NMR, and in situ binding measurements that C. diphtheriae selectively captures iron-loaded hemoglobin by partially ensconcing the heme molecules of its α subunits. Quantitative growth and heme release measurements are compatible with C. diphtheriae acquiring heme passively released from hemoglobin's β subunits. We propose a model in which HbpA and heme-binding receptors collectively function on the C. diphtheriae surface to capture hemoglobin and its spontaneously released heme. Acquisition mechanisms that exploit the propensity of hemoglobin's β subunit to release heme likely represent a common strategy used by bacterial pathogens to obtain iron during infections.


  • Organizational Affiliation

    Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Membrane protein198Corynebacterium diphtheriae NCTC 13129Mutation(s): 0 
Gene Names: DIP2330
UniProt
Find proteins for Q6NEE5 (Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis))
Explore Q6NEE5 
Go to UniProtKB:  Q6NEE5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6NEE5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01-AI161828

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-08
    Type: Initial release