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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Space Group = "P 61"

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Search Summary

This query matches 2,084 Structures.

Refinements

Structure Determination Methodology

experimental (2,084)

Scientific Name of Source Organism

	Homo sapiens (658)
	synthetic construct (191)
	Human immunodeficiency virus 1 (112)
	Mus musculus (92)
	Rattus norvegicus (78)
	Escherichia coli (65)
	Mycobacterium tuberculosis (35)
	Staphylococcus aureus (30)
	Escherichia coli K-12 (29)
	Arabidopsis thaliana (28)

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Taxonomy

	Eukaryota (1,143)
	Bacteria (614)
	other sequences (191)
	Riboviria (181)
	Archaea (77)
	Duplodnaviria (23)
	Eukaryota (eukaryotes) (21)
	Varidnaviria (8)
	unclassified sequences (5)
	Riboviria (RNA viruses and viroids) (4)

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Experimental Method

	X-RAY DIFFRACTION (2,082)
	ELECTRON CRYSTALLOGRAPHY (1)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

	Protein (2,031)
	DNA (346)
	RNA (48)
	NA-hybrid (21)

Refinement Resolution (Å)

	0.5 - 1.0 (4)
	1.0 - 1.5 (111)
	1.5 - 2.0 (675)
	2.0 - 2.5 (676)
	2.5 - 3.0 (404)
	3.0 - 3.5 (165)
	3.5 - 4.0 (35)
	4.0 - 4.5 (11)
	> 4.5 (3)

Release Date

	1975 - 1979 (1)
	1980 - 1984 (3)
	1985 - 1989 (5)
	1990 - 1994 (25)
	1995 - 1999 (83)
	2000 - 2004 (148)
	2005 - 2009 (349)
	2010 - 2014 (436)
	2015 - 2019 (524)
	2020 - 2024 (498)

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Enzyme Classification Name

	Transferases (494)
	Hydrolases (459)
	Oxidoreductases (124)
	Isomerases (33)
	Lyases (33)
	Ligases (25)
	Translocases (2)

Membrane Protein Annotation

	PDBTM (35)
	MemProtMD (32)
	OPM (23)
	mpstruc (23)

Symmetry Type

	Asymmetric (1,398)
	Cyclic (628)
	Dihedral (40)
	Helical (16)

SCOP Classification

	All beta proteins (313)
	Alpha and beta proteins (a/b) (340)
	All alpha proteins (216)
	Alpha and beta proteins (a+b) (207)
	Artifacts (129)
	Membrane and cell surface proteins and peptides (19)
	Small proteins (22)
	Multi-domain proteins (alpha and beta) (8)
	Coiled coil proteins (2)
	Peptides (1)

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AllSelected

1 to 25 of 2,084 Structures

Page 1 of 84

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115D \| pdb_0000115d	Download File View File

ORDERED WATER STRUCTURE IN AN A-DNA OCTAMER AT 1.7 ANGSTROMS RESOLUTION

Kennard, O., Cruse, W.B.T., Nachman, J., Prange, T., Shakked, Z., Rabinovich, D.

(1986) J Biomol Struct Dyn 3: 623-647

Released	1993-07-15
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	DNA (5'-D(GPGP(BRU)PAP(BRU)PAPCPC)-3') (nucleic acid)

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1A8G \| pdb_00001a8g	Download File View File

HIV-1 PROTEASE IN COMPLEX WITH SDZ283-910

Kallen, J., Billich, A., Scholz, D., Auer, M., Kungl, A.

(1999) J Mol Biology 286: 1147-1159

Released	1998-07-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	2Z4

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1AAQ \| pdb_00001aaq	Download File View File

HYDROXYETHYLENE ISOSTERE INHIBITORS OF HUMAN IMMUNODEFICIENCY VIRUS-1 PROTEASE: STRUCTURE-ACTIVITY ANALYSIS USING ENZYME KINETICS, X-RAY CRYSTALLOGRAPHY, AND INFECTED T-CELL ASSAYS

Lewis, M.

(1992) Biochemistry 31: 6646-6659

Released	1994-06-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	PSI

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1AKH \| pdb_00001akh	Download File View File

MAT A1/ALPHA2/DNA TERNARY COMPLEX

Li, T., Jin, Y., Vershon, A.K., Wolberger, C.

(1998) Nucleic Acids Res 26: 5707-5718

Released	1998-05-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (MATING-TYPE PROTEIN A-1) (protein) PROTEIN (MATING-TYPE PROTEIN ALPHA-2) (protein) DNA (5'-D(TPAPCPAPTPGPTPAPAPAPAPAPTPTPTPAPC PAPTPCPA)-3') (nucleic acid) DNA (5'-D(TPAPTPGPAPTPGPTPAPAPAPTPTPTPTPTPA PCPAPTPG)-3') (nucleic acid)

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1APY \| pdb_00001apy	Download File View File

HUMAN ASPARTYLGLUCOSAMINIDASE

Rouvinen, J., Oinonen, C.

(1995) Nat Struct Biol 2: 1102-1108

Released	1996-12-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ASPARTYLGLUCOSAMINIDASE (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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1APZ \| pdb_00001apz	Download File View File

HUMAN ASPARTYLGLUCOSAMINIDASE COMPLEX WITH REACTION PRODUCT

Rouvinen, J., Oinonen, C.

(1995) Nat Struct Biol 2: 1102-1108

Released	1996-12-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	ASPARTYLGLUCOSAMINIDASE (protein)
Unique Ligands	ASP, NAG
Unique branched monosaccharides	BMA, NAG

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1AQ7 \| pdb_00001aq7	Download File View File

TRYPSIN WITH INHIBITOR AERUGINOSIN 98-B

Sandler, B., Murakami, M., Clardy, J.

(1998) J Am Chem Soc 120: 595-596

Released	1998-02-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus Microcystis aeruginosa NIES-98
Macromolecule	AERUGINOSIN 98-B (protein) TRYPSIN (protein)

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1AUQ \| pdb_00001auq	Download File View File

A1 DOMAIN OF VON WILLEBRAND FACTOR

Emsley, J., Cruz, M., Handin, R., Liddington, R.

(1998) J Biological Chem 273: 10396-10401

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	A1 DOMAIN OF VON WILLEBRAND FACTOR (protein)
Unique Ligands	CD

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1AV8 \| pdb_00001av8	Download File View File

RIBONUCLEOTIDE REDUCTASE R2 SUBUNIT FROM E. COLI

Han, S., Arvai, A., Tainer, J.A.

(1998) Biochemistry 37: 5840-5848

Released	1998-10-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	RIBONUCLEOTIDE REDUCTASE R2 (protein)
Unique Ligands	FEO

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1AVP \| pdb_00001avp	Download File View File

STRUCTURE OF HUMAN ADENOVIRUS 2 PROTEINASE WITH ITS 11 AMINO ACID COFACTOR

Ding, J., Mcgrath, W.J., Sweet, R.M., Mangel, W.F.

(1996) EMBO J 15: 1778-1783

Released	1997-11-19
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Human adenovirus 2
Macromolecule	ADENOVIRAL PROTEINASE (protein)

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1AXA \| pdb_00001axa	Download File View File

ACTIVE-SITE MOBILITY IN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 PROTEASE AS DEMONSTRATED BY CRYSTAL STRUCTURE OF A28S MUTANT

Hong, L., Hartsuck, J.A., Foundling, S., Ermolieff, J., Tang, J.

(1998) Protein Sci 7: 300-305

Released	1998-04-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	U0E

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1B6B \| pdb_00001b6b	Download File View File

MELATONIN BIOSYNTHESIS: THE STRUCTURE OF SEROTONIN N-ACETYLTRANSFERASE AT 2.5 A RESOLUTION SUGGESTS A CATALYTIC MECHANISM

Hickman, A.B., Klein, D.C., Dyda, F.

(1999) Mol Cell 3: 23-32

Released	2000-01-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Ovis aries
Macromolecule	PROTEIN (ARYLALKYLAMINE N-ACETYLTRANSFERASE) (protein)

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1BDL \| pdb_00001bdl	Download File View File

HIV-1 (2:31-37) PROTEASE COMPLEXED WITH INHIBITOR SB203386

Swairjo, M.A., Abdel-Meguid, S.S.

(1998) Biochemistry 37: 10928-10936

Released	1998-08-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	IM1

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1BDQ \| pdb_00001bdq	Download File View File

HIV-1 (2:31-37, 47, 82) PROTEASE COMPLEXED WITH INHIBITOR SB203386

Swairjo, M.A., Abdel-Meguid, S.S.

(1998) Biochemistry 37: 10928-10936

Released	1998-08-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	IM1

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1BDR \| pdb_00001bdr	Download File View File

HIV-1 (2: 31, 33-37) PROTEASE COMPLEXED WITH INHIBITOR SB203386

Swairjo, M.A., Abdel-Meguid, S.S.

(1998) Biochemistry 37: 10928-10936

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	IM1

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1BK9 \| pdb_00001bk9	Download File View File

PHOSPHOLIPASE A2 MODIFIED BY PBPB

Zhao, H., Tang, L., Wang, X., Lin, Z., Zhou, Y.

(1998) Toxicon 36: 875-886

Released	1999-03-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gloydius halys
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	BU1, CA, PBP

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1BLI \| pdb_00001bli	Download File View File

BACILLUS LICHENIFORMIS ALPHA-AMYLASE

Machius, M., Declerck, N., Huber, R., Wiegand, G.

(1998) Structure 6: 281-292

Released	1999-03-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus licheniformis
Macromolecule	ALPHA-AMYLASE (protein)
Unique Ligands	CA, NA

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1BV7 \| pdb_00001bv7	Download File View File

COUNTERACTING HIV-1 PROTEASE DRUG RESISTANCE: STRUCTURAL ANALYSIS OF MUTANT PROTEASES COMPLEXED WITH XV638 AND SD146, CYCLIC UREA AMIDES WITH BROAD SPECIFICITIES

Ala, P., Chang, C.H.

(1998) Biochemistry 37: 15042-15049

Released	1998-09-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	PROTEIN (HIV-1 PROTEASE) (protein)
Unique Ligands	XV6

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1BV9 \| pdb_00001bv9	Download File View File

HIV-1 PROTEASE (I84V) COMPLEXED WITH XV638 OF DUPONT PHARMACEUTICALS

Ala, P., Chang, C.H.

(1998) Biochemistry 37: 15042-15049

Released	1998-09-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	PROTEIN (HIV-1 PROTEASE) (protein)
Unique Ligands	XV6

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1BWA \| pdb_00001bwa	Download File View File

HIV-1 PROTEASE (V82F/I84V) DOUBLE MUTANT COMPLEXED WITH XV638 OF DUPONT PHARMACEUTICALS

Ala, P., Chang, C.H.

(1998) Biochemistry 37: 15042-15049

Released	1998-10-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	PROTEIN (HIV-1 PROTEASE) (protein)
Unique Ligands	XV6

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1BWB \| pdb_00001bwb	Download File View File

HIV-1 PROTEASE (V82F/I84V) DOUBLE MUTANT COMPLEXED WITH SD146 OF DUPONT PHARMACEUTICALS

Ala, P., Chang, C.H.

(1998) Biochemistry 37: 15042-15049

Released	1998-09-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	PROTEIN (HIV-1 PROTEASE) (protein)
Unique Ligands	146

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1C28 \| pdb_00001c28	Download File View File

THE CRYSTAL STRUCTURE OF A COMPLMENT-1Q FAMILY PROTEIN SUGGESTS AN EVOLUTIONARY LINK TO TUMOR NECROSIS FACTOR

Shapiro, L., Scherer, P.

(1998) Curr Biol 8: 335-338

Released	1999-08-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (30 KD ADIPOCYTE COMPLEMENT-RELATED PROTEIN PRECURSOR (ACRP30)) (protein)