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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "RPL7AE"

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Search Summary

This query matches 38 Structures.

Refinements

Structure Determination Methodology

experimental (38)

Scientific Name of Source Organism

	Pyrococcus furiosus (11)
	Methanocaldococcus jannaschii (6)
	Archaeoglobus fulgidus DSM 4304 (5)
	Saccharolobus solfataricus (5)
	synthetic construct (5)
	Pyrococcus furiosus DSM 3638 (3)
	Pyrococcus horikoshii OT3 (3)
	Sulfolobus acidocaldarius DSM 639 (3)
	Haloferax volcanii (2)
	Methanocaldococcus jannaschii DSM 2661 (2)

More...

Taxonomy

	Archaea (38)
	other sequences (5)
	Bacteria (1)
	Eukaryota (1)

Experimental Method

	X-RAY DIFFRACTION (32)
	ELECTRON MICROSCOPY (5)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (38)
	RNA (33)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (8)
	2.0 - 2.5 (6)
	2.5 - 3.0 (6)
	3.0 - 3.5 (8)
	3.5 - 4.0 (1)
	4.0 - 4.5 (3)
	> 4.5 (4)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (7)
	2010 - 2014 (10)
	2015 - 2019 (10)
	2020 - 2024 (5)
	2025 - 2029 (3)

Enzyme Classification Name

	Isomerases (9)
	Hydrolases (2)
	Transferases (7)

Symmetry Type

	Asymmetric (28)
	Cyclic (12)

SCOP Classification

	Alpha and beta proteins (a+b) (7)
	Small proteins (8)
	All beta proteins (2)
	All alpha proteins (1)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

AllSelected

1 to 25 of 38 Structures

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1RA4 \| pdb_00001ra4	Download File View File

Crystal structure of the Methanococcus jannaschii L7Ae protein

Suryadi, J., Tran, E.J., Maxwell, E.S., Brown, B.A.

(2005) Biochemistry 44: 9657-9672

Released	2004-11-16
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	50S ribosomal protein L7Ae (protein)

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1RLG \| pdb_00001rlg	Download File View File

Molecular basis of Box C/D RNA-protein interaction: co-crystal structure of the Archaeal sRNP intiation complex

Moore, T., Zhang, Y., Fenley, M.O., Li, H.

(2004) Structure 12: 807-818

Released	2004-06-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	50S ribosomal protein L7Ae (protein) 25-MER (nucleic acid)

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1SDS \| pdb_00001sds	Download File View File

Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA

Hamma, T., Ferre-D'Amare, A.

(2004) Structure 12: 893-903

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	50S ribosomal protein L7Ae (protein) box H/ACA sRNA (nucleic acid)
Unique Ligands	CA, K

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1XBI \| pdb_00001xbi	Download File View File

High resolution structure of Methanocaldococcus jannaschii L7AE

Brown II, B.A., Suryadi, J., Lieberman, D.V., Tran, E.J., Maxwell, E.S.

(2005) Biochemistry 44: 9657-9672

Released	2005-08-09
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	50S ribosomal protein L7Ae (protein)
Unique Ligands	EPE

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2FC3 \| pdb_00002fc3	Download File View File

Crystal structure of the extremely thermostable Aeropyrum pernix L7Ae multifunctional protein

Brown II, B.A., Suryadi, J., Zhou, Z., Gupton Jr., T.B., Flowers, S.L.

(2013) Acta Crystallogr Sect F Struct Biol Cryst Commun 69: 979-988

Released	2006-11-28
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Aeropyrum pernix
Macromolecule	50S ribosomal protein L7Ae (protein)

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2HVY \| pdb_00002hvy	Download File View File

Crystal structure of an H/ACA box RNP from Pyrococcus furiosus

Ye, K.

(2006) Nature 443: 302-307

Released	2006-09-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus furiosus
Macromolecule	50S ribosomal protein L7Ae (protein) Probable tRNA pseudouridine synthase B (protein) Ribosome biogenesis protein Nop10 (protein) Small nucleolar rnp similar to gar1 (protein) H/ACA RNA (nucleic acid)
Unique Ligands	ATP, ZN

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3HAX \| pdb_00003hax	Download File View File

Crystal structure of a substrate-bound Gar1-minus H/ACA RNP from Pyrococcus furiosus

Ye, K.

(2009) Mol Cell 34: 427-439

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Pyrococcus furiosus
Macromolecule	50S ribosomal protein L7Ae (protein) Probable tRNA pseudouridine synthase B (protein) Ribosome biogenesis protein Nop10 (protein) 5'-R(APUPAPAPUPUP(FHU)PGPAPCPUPCPAPA)-3' (nucleic acid) H/ACA RNA (nucleic acid)
Unique Ligands	EDO, MG, PG4, PGE, ZN

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3HAY \| pdb_00003hay	Download File View File

Crystal structure of a substrate-bound full H/ACA RNP from Pyrococcus furiosus

Ye, K.

(2009) Mol Cell 34: 427-439

Released	2009-06-23
Method	X-RAY DIFFRACTION 4.99 Å
Organisms	Pyrococcus furiosus
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	ZN

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3HJW \| pdb_00003hjw	Download File View File

Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA

Liang, B., Zhou, J., Kahen, E., Terns, R.M., Terns, M.P., Li, H.

(2009) Nat Struct Mol Biol 16: 740-746

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Pyrococcus furiosus
Macromolecule	50S ribosomal protein L7Ae (protein) Pseudouridine synthase Cbf5 (protein) Ribosome biogenesis protein Nop10 (protein) 5'-R(GPAPGPCPGP(FHU)PGPCPGPGPUPUP*U)-3' (nucleic acid) RNA (58-MER) (nucleic acid)
Unique Ligands	K, ZN

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3ID5 \| pdb_00003id5	Download File View File

Crystal structure of Sulfolobus solfataricus C/D RNP assembled with Nop5, fibrillarin, L7Ae and a split half C/D RNA

Ye, K.

(2009) Proc Natl Acad Sci U S A 106: 13808-13813

Released	2009-08-25
Method	X-RAY DIFFRACTION 4.01 Å
Organisms	Saccharolobus solfataricus
Macromolecule	50S ribosomal protein L7Ae (protein) Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase (protein) Pre mRNA splicing protein (protein) half C/D RNA (nucleic acid)
Unique Ligands	SAM

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3LWO \| pdb_00003lwo	Download File View File

Structure of H/ACA RNP bound to a substrate RNA containing 5BrU

Zhou, J., Liang, B., Lv, C., Yang, W., Li, H.

(2010) J Mol Biology 401: 690-695

Released	2010-07-14
Method	X-RAY DIFFRACTION 2.855 Å
Organisms	Pyrococcus furiosus
Macromolecule	50S ribosomal protein L7Ae (protein) Pseudouridine synthase Cbf5 (protein) Ribosome biogenesis protein Nop10 (protein) 5'-R(GPAPGPCPGP(5BU)PGPCPGPGPUPUP*U)-3' (nucleic acid) H/ACA RNA (nucleic acid)
Unique Ligands	ZN

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3LWP \| pdb_00003lwp	Download File View File

Structure of H/ACA RNP bound to a substrate RNA containing 5BrdU

Zhou, J., Liang, B., Lv, C., Yang, W., Li, H.

(2010) J Mol Biology 401: 690-695

Released	2010-07-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pyrococcus furiosus
Macromolecule	Large ribosomal subunit protein eL8 (protein) Probable tRNA pseudouridine synthase B (protein) Ribosome biogenesis protein Nop10 (protein) 5'-R(GPAPGPCPGP(BRU)PGPCPGPGPUPUP*U)-3 (nucleic acid) H/ACA RNA (nucleic acid)
Unique Ligands	ZN

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3LWQ \| pdb_00003lwq	Download File View File

Structure of H/ACA RNP bound to a substrate RNA containing 3MU

Zhou, J., Liang, B., Lv, C., Yang, W., Li, H.

(2010) Biochemistry 49: 6276-6281

Released	2010-07-14
Method	X-RAY DIFFRACTION 2.678 Å
Organisms	Pyrococcus furiosus
Macromolecule	Large ribosomal subunit protein eL8 (protein) Probable tRNA pseudouridine synthase B (protein) Ribosome biogenesis protein Nop10 (protein) 5'-R(GPAPGPCPGP(UR3)PGPCPGPGPUPUP*U)-3 (nucleic acid) H/ACA RNA (nucleic acid)
Unique Ligands	ZN

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3LWR \| pdb_00003lwr	Download File View File

Structure of H/ACA RNP bound to a substrate RNA containing 4SU

Zhou, J., Liang, B., Lv, C., Yang, W., Li, H.

(2010) Biochemistry 49: 6276-6281

Released	2010-07-14
Method	X-RAY DIFFRACTION 2.203 Å
Organisms	Pyrococcus furiosus
Macromolecule	Large ribosomal subunit protein eL8 (protein) Probable tRNA pseudouridine synthase B (protein) Ribosome biogenesis protein Nop10 (protein) 5'-R(GPAPGPCPGP(4SU)PGPCPGPGPUPUP*U)-3' (nucleic acid) H/ACA RNA (nucleic acid)
Unique Ligands	ZN

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3LWV \| pdb_00003lwv	Download File View File

Structure of H/ACA RNP bound to a substrate RNA containing 2'-deoxyuridine

Zhou, J., Liang, B., Lv, C., Yang, W., Li, H.

(2010) Biochemistry 49: 6276-6281

Released	2010-07-14
Method	X-RAY DIFFRACTION 2.499 Å
Organisms	Pyrococcus furiosus synthetic construct
Macromolecule	Large ribosomal subunit protein eL8 (protein) Probable tRNA pseudouridine synthase B (protein) Ribosome biogenesis protein Nop10 (protein) 5'-R(GPAPGPCPGP(du)PGPCPGPGPUPUP*U)-3' (nucleic acid) H/ACA RNA (nucleic acid)
Unique Ligands	ZN

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3NMU \| pdb_00003nmu	Download File View File

Crystal Structure of substrate-bound halfmer box C/D RNP

Li, H., Xue, S., Wang, R.

(2010) Mol Cell 39: 939-949

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.729 Å
Organisms	Pyrococcus furiosus synthetic construct
Macromolecule	50S ribosomal protein L7Ae (protein) Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase (protein) NOP5/NOP56 related protein (protein) RNA (34-MER) (nucleic acid) RNA (5'-R(GPAPGPCPUPUPCPAPAPCPGPGP*C)-3') (nucleic acid)
Unique Ligands	SAM

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3NVI \| pdb_00003nvi	Download File View File

Structure of N-terminal truncated Nop56/58 bound with L7Ae and box C/D RNA

Li, H., Xue, S., Wang, R.

(2010) Mol Cell 39: 939-949

Released	2011-07-20
Method	X-RAY DIFFRACTION 2.709 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	50S ribosomal protein L7Ae (protein) NOP5/NOP56 related protein (protein) RNA (5'-R(CPUPCPUPGPAPCPCPGPAPAPAPGPGPCPGPUPGPAPUPGPAPGPC)-3') (nucleic acid)

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3NVK \| pdb_00003nvk	Download File View File

Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle

Xue, S., Wang, R., Li, H.

(2010) Mol Cell 39: 939-949

Released	2011-07-20
Method	X-RAY DIFFRACTION 3.209 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	50S ribosomal protein L7Ae (protein) Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase (protein) NOP5/NOP56 related protein (protein) RNA (5'-R(GPAPGPCPUPUPCPAPAPCPGPGPC)-3') (nucleic acid) RNA (5'-R(GPCPCPGPUPUPGPAPAPGPCPUPCPUPGPAPCPCPGPAPAPAPGPGPCPGPUPGPAPUPGPAPGP*C)-3') (nucleic acid)
Unique Ligands	SAM

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3PAF \| pdb_00003paf	Download File View File

M. jannaschii L7Ae mutant

Biswas, S., Maxwell, E.S.

To be published

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	50S ribosomal protein L7Ae (protein)
Unique Ligands	ACT, SO4

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3PLA \| pdb_00003pla	Download File View File

Crystal structure of a catalytically active substrate-bound box C/D RNP from Sulfolobus solfataricus

Lin, J., Lai, S., Jia, R., Xu, A., Zhang, L., Lu, J., Ye, K.

(2011) Nature 469: 559-563

Released	2011-01-26
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Saccharolobus solfataricus Saccharolobus solfataricus 98/2 synthetic construct
Macromolecule	50S ribosomal protein L7Ae (protein) Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase (protein) Pre mRNA splicing protein (protein) C/D guide RNA (nucleic acid) RNA (5'-R(CPCPAPUPGPAPGPUPGPU)-3') (nucleic acid)
Unique Ligands	SAH

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5DCV \| pdb_00005dcv	Download File View File

Crystal structure of PhoRpp38-SL12M complex

Oshima, K., Tanaka, Y., Yao, M.

(2016) Biochem Biophys Res Commun 474: 541-546

Released	2016-07-06
Method	X-RAY DIFFRACTION 3.401 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	50S ribosomal protein L7Ae (protein) RNA (47-MER) (nucleic acid)

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5GIN \| pdb_00005gin	Download File View File

Crystal structure of box C/D RNP with 12 nt guide regions and 9 nt substrates

Yang, Z., Lin, J., Ye, K.

(2016) Proc Natl Acad Sci U S A 113: 10878-10883

Released	2016-09-14
Method	X-RAY DIFFRACTION 3.308 Å
Organisms	Saccharolobus solfataricus
Macromolecule	50S ribosomal protein L7Ae (protein) C/D box methylation guide ribonucleoprotein complex aNOP56 subunit (protein) Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase (protein) C/D RNA (nucleic acid) substrate (nucleic acid)
Unique Ligands	SAH

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5GIO \| pdb_00005gio	Download File View File

Crystal structure of box C/D RNP with 12 nt guide regions and 13 nt substrates

Yang, Z., Lin, J., Ye, K.

(2016) Proc Natl Acad Sci U S A 113: 10878-10883

Released	2016-09-14
Method	X-RAY DIFFRACTION 3.604 Å
Organisms	Saccharolobus solfataricus
Macromolecule	50S ribosomal protein L7Ae (protein) C/D box methylation guide ribonucleoprotein complex aNOP56 subunit (protein) Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase (protein) C/D RNA (nucleic acid) substrate (nucleic acid)
Unique Ligands	SAH

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5GIP \| pdb_00005gip	Download File View File

Crystal structure of box C/D RNP with 13 nt guide regions and 11 nt substrates

Yang, Z., Lin, J., Ye, K.

(2016) Proc Natl Acad Sci U S A 113: 10878-10883

Released	2016-09-14
Method	X-RAY DIFFRACTION 3.129 Å
Organisms	Saccharolobus solfataricus
Macromolecule	50S ribosomal protein L7Ae (protein) C/D box methylation guide ribonucleoprotein complex aNOP56 subunit (protein) Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase (protein) C/D RNA (nucleic acid) substrate (nucleic acid)
Unique Ligands	SAH

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5XTM \| pdb_00005xtm	Download File View File

Crystal structure of PhoRpp38 bound to a K-turn in P12.2 helix

Oshima, K., Kimura, M.

(2018) Acta Crystallogr F Struct Biol Commun 74: 57-64

Released	2018-02-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	50S ribosomal protein L7Ae (protein) RNA (47-MER) (nucleic acid)
Unique Ligands	MG

1 to 25 of 38 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1RA4 | pdb_00001ra4

1RLG | pdb_00001rlg

1SDS | pdb_00001sds

1XBI | pdb_00001xbi

2FC3 | pdb_00002fc3

2HVY | pdb_00002hvy

3HAX | pdb_00003hax

3HAY | pdb_00003hay

3HJW | pdb_00003hjw

3ID5 | pdb_00003id5

3LWO | pdb_00003lwo

3LWP | pdb_00003lwp

3LWQ | pdb_00003lwq

3LWR | pdb_00003lwr

3LWV | pdb_00003lwv

3NMU | pdb_00003nmu

3NVI | pdb_00003nvi

3NVK | pdb_00003nvk

3PAF | pdb_00003paf

3PLA | pdb_00003pla

5DCV | pdb_00005dcv

5GIN | pdb_00005gin

5GIO | pdb_00005gio

5GIP | pdb_00005gip

5XTM | pdb_00005xtm