RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Gene Name = "JW0912"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Escherichia coli K-12 (17)
	Escherichia coli (3)
	Klebsiella pneumoniae (2)
	Serratia marcescens (1)

Taxonomy

Bacteria (18)

Experimental Method

	X-RAY DIFFRACTION (16)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (5)
	2.5 - 3.0 (1)
	3.0 - 3.5 (6)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (7)
	2015 - 2019 (3)
	2020 - 2024 (4)

Enzyme Classification Name

Hydrolases (3)

Membrane Protein Annotation

	PDBTM (18)
	MemProtMD (17)
	mpstruc (6)
	OPM (5)

Symmetry Type

	Cyclic (15)
	Asymmetric (3)

SCOP Classification

Membrane and cell surface proteins and peptides (12)

AllSelected

1 to 18 of 18 Structures

Page 1 of 1

Sort by

Explore in 3D

2ZLD \| pdb_00002zld	Download File View File

Structure of OmpF co-crystallized with T83

Cramer, W.A., Zakharov, S.D., Yamashita, E.

(2008) EMBO J 27: 2171-2180

Released	2008-07-29
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	Colicin-E3 (protein) Outer membrane protein F (protein)

Explore in 3D

3FYX \| pdb_00003fyx	Download File View File

The Structure of OmpF porin with a synthetic dibenzo-18-crown-6 as modulator

Reitz, S., Cebi, M., Koert, U., Essen, L.O.

(2009) Angew Chem Int Ed Engl 48: 4853-4857

Released	2009-06-30
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein F (protein)
Unique Ligands	451, EPE

Explore in 3D

3HW9 \| pdb_00003hw9	Download File View File

Cation selective pathway of OmpF porin revealed by anomalous x-ray diffraction

Balasundaresan, D., Raychaudhury, S., Blachowicz, L., Roux, B.

(2010) J Mol Biology 396: 293-300

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein F (protein)
Unique Ligands	CL, K, P6G

Explore in 3D

3HWB \| pdb_00003hwb	Download File View File

Cation selective pathway of OmpF porin revealed by anomalous diffraction

Balasundaresan, D., Raychaudhury, S., Blachowicz, L., Roux, B.

(2010) J Mol Biology 396: 293-300

Released	2009-12-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein F (protein)
Unique Ligands	P6G, RB

Explore in 3D

4GCP \| pdb_00004gcp	Download File View File

Crystal Structure of E. coli OmpF porin in complex with Ampicillin

Ziervogel, B.K., Roux, B.

(2013) Structure 21: 76-87

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein F (protein)
Unique Ligands	AIC

Explore in 3D

4GCQ \| pdb_00004gcq	Download File View File

Crystal Structure of E. coli OmpF porin in complex with Carbenicillin

Ziervogel, B.K., Roux, B.

(2013) Structure 21: 76-87

Released	2012-12-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein F (protein)
Unique Ligands	0JM

Explore in 3D

4GCS \| pdb_00004gcs	Download File View File

Crystal Structure of E. coli OmpF porin in complex with Ertapenem

Ziervogel, B.K., Roux, B.

(2013) Structure 21: 76-87

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein F (protein)
Unique Ligands	1RG

Explore in 3D

4LSE \| pdb_00004lse	Download File View File

Ion selectivity of OmpF porin soaked in 0.2M NaBr

Balasundaresan, D., Blachowicz, L., Roux, B.

(2013) J Am Chem Soc 135: 16561-16568

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein F (protein)
Unique Ligands	BR, C8E, MG, PEG

Explore in 3D

4LSF \| pdb_00004lsf	Download File View File

Ion selectivity of OmpF soaked in 0.1M KBr

Balasundaresan, D., Blachowicz, L., Roux, B.

(2013) J Am Chem Soc 135: 16561-16568

Released	2013-10-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein F (protein)
Unique Ligands	BR, GOL

Explore in 3D

4LSH \| pdb_00004lsh	Download File View File

Ion selectivity of OmpF porin soaked in 0.2M KBr

Balasundaresan, D., Blachowicz, L., Roux, B.

(2013) J Am Chem Soc 135: 16561-16568

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein F (protein)
Unique Ligands	BR, MG

Explore in 3D

4LSI \| pdb_00004lsi	Download File View File

Ion selectivity of OmpF porin soaked in 0.3M KBr

Balasundaresan, D., Blachowicz, L., Roux, B.

(2013) J Am Chem Soc 135: 16561-16568

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.089 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein F (protein)
Unique Ligands	BR, C8E, GOL, MG, PEG

Explore in 3D

5NUO \| pdb_00005nuo	Download File View File

Structural basis for maintenance of bacterial outer membrane lipid asymmetry

Abellon-Ruiz, J., Kaptan, S.S., Basle, A., Claudi, B., Bumann, D., Kleinekathofer, U., van den Berg, B.

(2017) Nat Microbiol 2: 1616-1623

Released	2017-10-25
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli K-12 Klebsiella pneumoniae
Macromolecule	ABC transporter permease (protein) Outer membrane protein F (protein)
Unique Ligands	C8E, SO4

Explore in 3D

5NUQ \| pdb_00005nuq	Download File View File

Structural basis for maintenance of bacterial outer membrane lipid asymmetry

Abellon-Ruiz, J., Kaptan, S.S., Basle, A., Claudi, B., Bumann, D., Kleinekathofer, U., van den Berg, B.

(2017) Nat Microbiol 2: 1616-1623

Released	2017-10-25
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli K-12 Serratia marcescens
Macromolecule	Outer membrane protein F (protein) Probable phospholipid-binding lipoprotein mlaA (protein)
Unique Ligands	C8E

Explore in 3D

5NUR \| pdb_00005nur	Download File View File

Structural basis for maintenance of bacterial outer membrane lipid asymmetry

Abellon-Ruiz, J., Kaptan, S.S., Basle, A., Claudi, B., Bumann, D., Kleinekathofer, U., van den Berg, B.

(2017) Nat Microbiol 2: 1616-1623

Released	2017-10-25
Method	X-RAY DIFFRACTION 3.29 Å
Organisms	Escherichia coli K-12 Klebsiella pneumoniae
Macromolecule	ABC transporter permease (protein) Outer membrane protein F (protein)
Unique Ligands	C8E, CA, SO4
Unique branched monosaccharides	GP1, KDO, Z9M

Explore in 3D

6ZHP \| pdb_00006zhp	Download File View File

Crystal structure of OmpF porin soaked in ciprofloxacin metaloantibiotic

Sousa, C.F., Morais-Cabral, J., Gameiro, P.

To be published

Released	2021-05-05
Method	X-RAY DIFFRACTION 2.053 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane porin F (protein)
Unique Ligands	MG, NA, QLB

Explore in 3D

6ZHV \| pdb_00006zhv	Download File View File

Crystal structure of OmpF porin soaked in ciprofloxacin metaloantibiotic

Sousa, C.F., Morais-Cabral, J., Gameiro, P.

To be published

Released	2021-05-05
Method	X-RAY DIFFRACTION 1.945 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane porin F (protein)
Unique Ligands	MG, NA, QLB

Explore in 3D

7NST \| pdb_00007nst	Download File View File

ColicinE9 partial translocation complex

Webby, M.N., Kleanthous, C., Lukoyanova, N., Housden, N.G.

(2021) EMBO J 40: e108610-e108610

Released	2021-08-11
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	Colicin-E9 (protein) Outer membrane protein F (protein) Tol-Pal system protein TolB (protein)

Explore in 3D

7NSU \| pdb_00007nsu	Download File View File

ColicinE9 intact translocation complex

Webby, M.N., Kleanthous, C., Lukoyanova, N., Housden, N.G.

(2021) EMBO J 40: e108610-e108610

Released	2021-08-11
Method	ELECTRON MICROSCOPY 4.7 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	Colicin-E9 (protein) Outer membrane protein F (protein) Tol-Pal system protein TolB (protein) Vitamin B12 transporter BtuB (protein)

1 to 18 of 18 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2ZLD | pdb_00002zld

Structure of OmpF co-crystallized with T83

3FYX | pdb_00003fyx

The Structure of OmpF porin with a synthetic dibenzo-18-crown-6 as modulator

3HW9 | pdb_00003hw9

Cation selective pathway of OmpF porin revealed by anomalous x-ray diffraction

3HWB | pdb_00003hwb

Cation selective pathway of OmpF porin revealed by anomalous diffraction

4GCP | pdb_00004gcp

Crystal Structure of E. coli OmpF porin in complex with Ampicillin

4GCQ | pdb_00004gcq

Crystal Structure of E. coli OmpF porin in complex with Carbenicillin

4GCS | pdb_00004gcs

Crystal Structure of E. coli OmpF porin in complex with Ertapenem

4LSE | pdb_00004lse

Ion selectivity of OmpF porin soaked in 0.2M NaBr

4LSF | pdb_00004lsf

Ion selectivity of OmpF soaked in 0.1M KBr

4LSH | pdb_00004lsh

Ion selectivity of OmpF porin soaked in 0.2M KBr

4LSI | pdb_00004lsi

Ion selectivity of OmpF porin soaked in 0.3M KBr

5NUO | pdb_00005nuo

Structural basis for maintenance of bacterial outer membrane lipid asymmetry

5NUQ | pdb_00005nuq

Structural basis for maintenance of bacterial outer membrane lipid asymmetry

5NUR | pdb_00005nur

Structural basis for maintenance of bacterial outer membrane lipid asymmetry

6ZHP | pdb_00006zhp

Crystal structure of OmpF porin soaked in ciprofloxacin metaloantibiotic

6ZHV | pdb_00006zhv

Crystal structure of OmpF porin soaked in ciprofloxacin metaloantibiotic

7NST | pdb_00007nst

ColicinE9 partial translocation complex

7NSU | pdb_00007nsu

ColicinE9 intact translocation complex

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2ZLD | pdb_00002zld

3FYX | pdb_00003fyx

3HW9 | pdb_00003hw9

3HWB | pdb_00003hwb

4GCP | pdb_00004gcp

4GCQ | pdb_00004gcq

4GCS | pdb_00004gcs

4LSE | pdb_00004lse

4LSF | pdb_00004lsf

4LSH | pdb_00004lsh

4LSI | pdb_00004lsi

5NUO | pdb_00005nuo

5NUQ | pdb_00005nuq

5NUR | pdb_00005nur

6ZHP | pdb_00006zhp

6ZHV | pdb_00006zhv

7NST | pdb_00007nst

7NSU | pdb_00007nsu