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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Scientific Name of the Source Organism = "Corynebacterium diphtheriae"

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Search Summary

This query matches 104 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (104)

Scientific Name of Source Organism

	Corynebacterium diphtheriae (104)
	Corynebacterium diphtheriae NCTC 13129 (1)

Taxonomy

Bacteria (104)

Experimental Method

	X-RAY DIFFRACTION (97)
	SOLUTION NMR (5)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (101)
	DNA (2)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (36)
	2.0 - 2.5 (32)
	2.5 - 3.0 (16)
	3.0 - 3.5 (8)

Release Date

	1995 - 1999 (10)
	2000 - 2004 (16)
	2005 - 2009 (22)
	2010 - 2014 (15)
	2015 - 2019 (16)
	2020 - 2024 (23)
	2025 - 2029 (2)

Enzyme Classification Name

	Oxidoreductases (28)
	Transferases (13)
	Hydrolases (2)
	Isomerases (2)
	Lyases (1)

Symmetry Type

	Asymmetric (55)
	Cyclic (48)
	Dihedral (4)
	Octahedral (1)

SCOP Classification

	All alpha proteins (37)
	All beta proteins (28)
	Alpha and beta proteins (a+b) (11)
	Membrane and cell surface proteins and peptides (9)
	Artifacts (7)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 104 Polymer Entities

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1BI0: Entity 1	Download File View File

STRUCTURE OF APO-AND HOLO-DIPHTHERIA TOXIN REPRESSOR

Pohl, E., Hol, W.G.

(1998) J Biological Chem 273: 22420-22427

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.3 Å
Chain ID	A
Organism	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR

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1BI1: Entity 1	Download File View File

STRUCTURE OF APO-AND HOLO-DIPHTHERIA TOXIN REPRESSOR

Pohl, E., Hol, W.G.J.

(1998) J Biological Chem 273: 22420-22427

Released	1999-06-22
Method	X-RAY DIFFRACTION 2.2 Å
Chain ID	A
Organism	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR

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1BI2: Entity 1	Download File View File

STRUCTURE OF APO-AND HOLO-DIPHTHERIA TOXIN REPRESSOR

Pohl, E., Hol, W.G.J.

(1998) J Biological Chem 273: 22420-22427

Released	1999-06-22
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, B
Organism	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR

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1BI3: Entity 1	Download File View File

STRUCTURE OF APO-AND HOLO-DIPHTHERIA TOXIN REPRESSOR

Pohl, E., Hol, W.G.J.

(1998) J Biological Chem 273: 22420-22427

Released	1999-06-22
Method	X-RAY DIFFRACTION 2.4 Å
Chain IDs	A, B
Organism	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR

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1BYM: Entity 1	Download File View File

SOLUTION STRUCTURES OF THE C-TERMINAL DOMAIN OF DIPHTHERIA TOXIN REPRESSOR

Wang, G., Wylie, G.P., Twigg, P.D., Caspar, D.L.D., Murphy, J.R., Logan, T.M.

(1999) Proc Natl Acad Sci U S A 96: 6119-6124

Released	1998-10-21
Method	SOLUTION NMR
Chain ID	A
Organism	Corynebacterium diphtheriae
Macromolecule	PROTEIN (DIPHTHERIA TOXIN REPRESSOR)

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1C0W: Entity 3	Download File View File

CRYSTAL STRUCTURE OF THE COBALT-ACTIVATED DIPHTHERIA TOXIN REPRESSOR-DNA COMPLEX REVEALS A METAL BINDING SH-LIKE DOMAIN

Pohl, E., Holmes, R.K., Hol, W.G.

(1999) J Mol Biology 292: 653-667

Released	2000-07-22
Method	X-RAY DIFFRACTION 3.2 Å
Chain IDs	C [auth A], D [auth B], E [auth C], F [auth D]
Organism	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR

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1DDN: Entity 3	Download File View File

DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX DNA OPERATOR COMPLEX

White, A., Ding, X., Vanderspek, J.C., Murphy, J.R., Ringe, D.

(1998) Nature 394: 502-506

Released	1998-10-14
Method	X-RAY DIFFRACTION 3 Å
Chain IDs	C [auth A], D [auth B], E [auth C], F [auth D]
Organism	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOX REPRESSOR

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1DPR: Entity 1	Download File View File

STRUCTURES OF THE APO-AND METAL ION ACTIVATED FORMS OF THE DIPHTHERIA TOX REPRESSOR FROM CORYNEBACTERIUM DIPHTHERIAE

Schiering, N., Tao, X., Murphy, J., Petsko, G.A., Ringe, D.

(1995) Proc Natl Acad Sci U S A 92: 9843-9850

Released	1995-09-15
Method	X-RAY DIFFRACTION 3 Å
Chain IDs	A, B
Organism	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOX REPRESSOR

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1F0L: Entity 1	Download File View File

1.55 ANGSTROM CRYSTAL STRUCTURE OF WILD TYPE DIPHTHERIA TOXIN

Steere, B., Eisenberg, D.

(2001) Thesis

Released	2000-11-16
Method	X-RAY DIFFRACTION 1.55 Å
Chain IDs	A, B
Organism	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN

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1F5T: Entity 3	Download File View File

DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL AND DTXR CONSENSUS BINDING SEQUENCE

Chen, S., White, A., Love, J., Murphy, J.R., Ringe, D.

(2000) Biochemistry 39: 10397-10407

Released	2000-09-25
Method	X-RAY DIFFRACTION 3 Å
Chain IDs	C [auth A], D [auth B], E [auth C], F [auth D]
Organism	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR

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1FWZ: Entity 1	Download File View File

GLU20ALA DTXR

Pohl, E., Goranson-Siekierke, J., Holmes, R.K., Hol, W.G.J.

(2001) Acta Crystallogr D Biol Crystallogr 57: 619-627

Released	2001-09-25
Method	X-RAY DIFFRACTION 2.3 Å
Chain ID	A
Organism	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR

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1G3S: Entity 1	Download File View File

CYS102SER DTXR

Pohl, E., Goranson-Siekierke, J., Holmes, R.K., Hol, W.G.J.

(2001) Acta Crystallogr D Biol Crystallogr 57: 619-627

Released	2001-10-25
Method	X-RAY DIFFRACTION 2.4 Å
Chain ID	A
Organism	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR

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1G3T: Entity 1	Download File View File

CYS102SER DTXR

Pohl, E., Goranson-Siekierke, J., Holmes, R.K., Hol, W.G.J.

(2001) Acta Crystallogr D Biol Crystallogr 57: 619-627

Released	2001-10-25
Method	X-RAY DIFFRACTION 2.35 Å
Chain IDs	A, B
Organism	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR

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1G3W: Entity 1	Download File View File

CD-CYS102SER DTXR

Pohl, E., Goranson-Siekierke, J., Holmes, R.K., Hol, W.G.J.

(2001) Acta Crystallogr D Biol Crystallogr 57: 619-627

Released	2001-10-25
Method	X-RAY DIFFRACTION 2.4 Å
Chain ID	A
Organism	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR

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1G3Y: Entity 1	Download File View File

ARG80ALA DTXR

Pohl, E., Goranson-Siekierke, J., Holmes, R.K., Hol, W.G.J.

(2001) Acta Crystallogr D Biol Crystallogr 57: 619-627

Released	2001-10-25
Method	X-RAY DIFFRACTION 2.8 Å
Chain ID	A
Organism	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR

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1IW0: Entity 1	Download File View File

Crystal structure of a heme oxygenase (HmuO) from Corynebacterium diphtheriae complexed with heme in the ferric state

Hirotsu, S., Unno, M., Chu, G.C., Lee, D.S., Park, S.Y., Shiro, Y., Ikeda-Saito, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 11937-11947

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.4 Å
Chain IDs	A, B, C
Organism	Corynebacterium diphtheriae
Macromolecule	Heme oxygenase

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1IW1: Entity 1	Download File View File

Crystal structure of a heme oxygenase (HmuO) from Corynebacterium diphtheriae complexed with heme in the ferrous state

Hirotsu, S., Unno, M., Chu, G.C., Lee, D.S., Park, S.Y., Shiro, Y., Ikeda-Saito, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 11937-11947

Released	2003-04-04
Method	X-RAY DIFFRACTION 1.5 Å
Chain IDs	A, B, C
Organism	Corynebacterium diphtheriae
Macromolecule	Heme oxygenase

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1P92: Entity 1	Download File View File

Crystal Structure of (H79A)DtxR

D'Aquino, J.A., Ringe, D.

(2003) J Bacteriol 185: 4081-4086

Released	2004-05-25
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Corynebacterium diphtheriae
Macromolecule	Diphtheria toxin repressor

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1QVP: Entity 1	Download File View File

C terminal SH3-like domain from Diphtheria toxin Repressor residues 144-226.

Wylie, G.P., Rangachari, V., Bienkiewicz, E.A., Marin, V., Bhattacharya, N., Love, J.F., Murphy, J.R., Logan, T.M.

(2005) Biochemistry 44: 40-51

Released	2004-11-02
Method	SOLUTION NMR
Chain ID	A
Organism	Corynebacterium diphtheriae
Macromolecule	Diphtheria toxin repressor

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1QW1: Entity 1	Download File View File

Solution Structure of the C-Terminal Domain of DtxR residues 110-226

Wylie, G.P., Rangachari, V., Bienkiewicz, E.A., Love, J.F., Murphy, J.R., Logan, T.M.

(2005) Biochemistry 44: 40-51

Released	2005-03-15
Method	SOLUTION NMR
Chain ID	A
Organism	Corynebacterium diphtheriae
Macromolecule	Diphtheria toxin repressor

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1V8X: Entity 1	Download File View File

Crystal Structure of the Dioxygen-bound Heme Oxygenase from Corynebacterium diphtheriae

Unno, M., Matsui, T., Chu, G.C., Couture, M., Yoshida, T., Rousseau, D.L., Olson, J.S., Ikeda-Saito, M.

(2004) J Biological Chem 279: 21055-21061

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, B, C
Organism	Corynebacterium diphtheriae
Macromolecule	Heme oxygenase

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1WNV: Entity 1	Download File View File

D136A mutant of Heme Oxygenase from Corynebacterium diphtheriae (HmuO)

Matsui, T., Unno, M., Ikeda-Saito, M.

(2005) J Biological Chem 280: 2981-2989

Released	2004-11-09
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, B, C
Organism	Corynebacterium diphtheriae
Macromolecule	Heme oxygenase

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1WNW: Entity 1	Download File View File

D136N mutant of Heme Oxygenase from Corynebacterium diphtheriae (HmuO)

Unno, M., Matsui, T., Ikeda-Saito, M.

(2005) J Biological Chem 280: 2981-2989

Released	2004-11-09
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	A, B, C
Organism	Corynebacterium diphtheriae
Macromolecule	Heme oxygenase

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1WNX: Entity 1	Download File View File

D136E mutant of Heme Oxygenase from Corynebacterium diphtheriae (HmuO)

Unno, M., Matsui, T., Ikeda-Saito, M.

(2005) J Biological Chem 280: 2981-2989

Released	2004-11-09
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, B
Organism	Corynebacterium diphtheriae
Macromolecule	Heme oxygenase

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1WZD: Entity 1	Download File View File

Crystal Structure Of An Artificial Metalloprotein: Fe(10-CH2CH2COOH-Salophen)/Wild Type Heme oxygenase

Unno, M., Yokoi, N., Ueno, T., Watanabe, Y., Ikeda-Saito, M.

(2006) Proc Natl Acad Sci U S A 103: 9416-9421

Released	2006-02-21
Method	X-RAY DIFFRACTION 1.35 Å
Chain IDs	A, B
Organism	Corynebacterium diphtheriae
Macromolecule	Heme oxygenase

1 to 25 of 104 Polymer Entities

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Structure Determination Methodology

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