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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Blastochloris viridis (4)
	Burkholderia cenocepacia BC7 (1)
	Burkholderia cenocepacia PC184 (1)
	Homo sapiens (1)
	Saccharophagus degradans 2-40 (1)
	Thermus thermophilus (1)

Taxonomy

	Bacteria (8)
	Eukaryota (1)

Experimental Method

	X-RAY DIFFRACTION (8)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (3)
	3.5 - 4.0 (5)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (2)
	2015 - 2019 (5)
	2020 - 2024 (1)

Enzyme Classification Name

Transferases (1)

Membrane Protein Annotation

	PDBTM (5)
	MemProtMD (4)
	mpstruc (1)

Symmetry Type

	Asymmetric (8)
	Cyclic (1)

SCOP Classification

All beta proteins (2)

AllSelected

1 to 9 of 9 Structures

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1WUB \| pdb_00001wub	Download File View File

Crystal structure of the polyisoprenoid-binding protein, TT1927b, from Thermus thermophilus HB8

Handa, N., Idaka, M., Terada, T., Hamana, H., Ishizuka, Y., Park, S.-Y., Tame, J.R.H., Doi-Katayama, Y., Hirota, H., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Protein Sci 14: 1004-1010

Released	2004-12-21
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Thermus thermophilus
Macromolecule	conserved hypothetical protein TT1927b (protein)
Unique Ligands	OTP

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2X32 \| pdb_00002x32	Download File View File

Structure of a polyisoprenoid binding domain from Saccharophagus degradans implicated in plant cell wall breakdown

Vincent, F., Dal Molin, D., Weiner, R.M., Bourne, Y., Henrissat, B.

(2010) FEBS Lett 584: 1577

Released	2010-03-23
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Saccharophagus degradans 2-40
Macromolecule	CELLULOSE-BINDING PROTEIN (protein)
Unique Ligands	IMD, OTP

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4CAS \| pdb_00004cas	Download File View File

Serial femtosecond crystallography structure of a photosynthetic reaction center

Johansson, L.C., Arnlund, D., Katona, G., White, T.A., Barty, A., DePonte, D.P., Shoeman, R.L., Wickstrand, C., Sharma, A., Williams, G.J., Aquila, A., Bogan, M.J., Caleman, C., Davidsson, J., Doak, R.B., Frank, M., Fromme, R., Galli, L., Grotjohann, I., Hunter, M.S., Kassemeyer, S., Kirian, R.A., Kupitz, C., Liang, M., Lomb, L., Malmerberg, E., Martin, A.V., Messerschmidt, M., Nass, K., Redecke, L., Seibert, M.M., Sjohamn, J., Steinbrener, J., Stellato, F., Wang, D., Wahlgren, W.Y., Weierstall, U., Westenhoff, S., Zatsepin, N.A., Boutet, S., Spence, J.C.H., Schlichting, I., Chapman, H.N., Fromme, P., Neutze, R.

(2013) Nat Commun 4: 2911-2911

Released	2013-12-25
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Blastochloris viridis
Macromolecule	PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT (protein) REACTION CENTER PROTEIN H CHAIN (protein) REACTION CENTER PROTEIN L CHAIN (protein) REACTION CENTER PROTEIN M CHAIN (protein)
Unique Ligands	BCL, BPB, DGA, FE2, HEC, MPG, MQ7, NS5, OTP, PO4

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5IXG \| pdb_00005ixg	Download File View File

Crystal Structure of Burkholderia cenocepacia BcnB

Loutet, S.A., Murphy, M.E.P.

(2017) mBio 8:

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Burkholderia cenocepacia PC184
Macromolecule	YceI (protein)
Unique Ligands	OTP, PEG

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5IXH \| pdb_00005ixh	Download File View File

Crystal Structure of Burkholderia cenocepacia BcnA

Loutet, S.A., Murphy, M.E.P.

(2017) mBio 8:

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Burkholderia cenocepacia BC7
Macromolecule	YceI-like domain protein (protein)
Unique Ligands	OTP, SO4, TRS

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5M7J \| pdb_00005m7j	Download File View File

Blastochloris viridis photosynthetic reaction center structure using best crystal approach

Sharma, A.S., Johansson, L., Dunevall, E., Wahlgren, W.Y., Neutze, R., Katona, G.

(2017) Acta Crystallogr A Found Adv 73: 93-101

Released	2017-02-08
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Blastochloris viridis
Macromolecule	Photosynthetic reaction center cytochrome c subunit (protein) Reaction center protein H chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	BCL, BPB, DGA, FE2, HEC, MPG, MQ7, NS5, OTP, PO4

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5M7K \| pdb_00005m7k	Download File View File

Blastochloris viridis photosynthetic reaction center - RC_vir_xfel

Sharma, A.S., Johansson, L., Dunevall, E., Wahlgren, W.Y., Neutze, R., Katona, G.

(2017) Acta Crystallogr A Found Adv 73: 93-101

Released	2017-02-08
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Blastochloris viridis
Macromolecule	Photosynthetic reaction center cytochrome c subunit (protein) Reaction center protein H chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	BCL, BPB, DGA, FE2, HEC, MPG, MQ7, NS5, OTP, PO4

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5M7L \| pdb_00005m7l	Download File View File

Blastochloris viridis photosynthetic reaction center synchrotron structure

Sharma, A.S., Johansson, L., Dunevall, E., Wahlgren, W.Y., Neutze, R., Katona, G.

(2017) Acta Crystallogr A Found Adv 73: 93-101

Released	2017-02-08
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Blastochloris viridis
Macromolecule	Photosynthetic reaction center cytochrome c subunit (protein) Reaction center protein H chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	BCL, BPB, DGA, FE2, HEC, MPG, MQ7, NS5, OTP, PO4

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8PN9 \| pdb_00008pn9	Download File View File

Structure of human oligosaccharyltransferase OST-A complex bound to NGI-1

Ramirez, A.S., Kowal, J., Locher, K.P.

(2024) Cell 187: 2209-2223.e16

Released	2024-05-08
Method	ELECTRON MICROSCOPY 3.61 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8
Unique Ligands	EGY, KZB, MN, OTP, ZXT
Unique branched monosaccharides	BMA, GLC, MAN, NAG, NDG

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1WUB | pdb_00001wub

Crystal structure of the polyisoprenoid-binding protein, TT1927b, from Thermus thermophilus HB8

2X32 | pdb_00002x32

Structure of a polyisoprenoid binding domain from Saccharophagus degradans implicated in plant cell wall breakdown

4CAS | pdb_00004cas

Serial femtosecond crystallography structure of a photosynthetic reaction center

5IXG | pdb_00005ixg

Crystal Structure of Burkholderia cenocepacia BcnB

5IXH | pdb_00005ixh

Crystal Structure of Burkholderia cenocepacia BcnA

5M7J | pdb_00005m7j

Blastochloris viridis photosynthetic reaction center structure using best crystal approach

5M7K | pdb_00005m7k

Blastochloris viridis photosynthetic reaction center - RC_vir_xfel

5M7L | pdb_00005m7l

Blastochloris viridis photosynthetic reaction center synchrotron structure

8PN9 | pdb_00008pn9

Structure of human oligosaccharyltransferase OST-A complex bound to NGI-1

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1WUB | pdb_00001wub

2X32 | pdb_00002x32

4CAS | pdb_00004cas

5IXG | pdb_00005ixg

5IXH | pdb_00005ixh

5M7J | pdb_00005m7j

5M7K | pdb_00005m7k

5M7L | pdb_00005m7l

8PN9 | pdb_00008pn9