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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Stubbs, M.T."

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Search Summary

This query matches 192 Structures.

Refinements

Structure Determination Methodology

experimental (192)

Scientific Name of Source Organism

	Bos taurus (65)
	Homo sapiens (29)
	Zymomonas mobilis (14)
	Hirudo medicinalis (12)
	Streptoalloteichus tenebrarius (10)
	Bacillus subtilis (9)
	Drosophila melanogaster (8)
	Mus musculus (8)
	Borna disease virus (7)
	Streptomyces coelicolor A3(2) (6)

More...

Taxonomy

	Eukaryota (126)
	Bacteria (56)
	Riboviria (8)
	Archaea (4)
	Eukaryota (eukaryotes) (2)

Experimental Method

	X-RAY DIFFRACTION (182)
	ELECTRON MICROSCOPY (6)
	SOLUTION NMR (3)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

Protein (192)

Refinement Resolution (Å)

	1.0 - 1.5 (14)
	1.5 - 2.0 (79)
	2.0 - 2.5 (52)
	2.5 - 3.0 (26)
	3.0 - 3.5 (15)
	3.5 - 4.0 (3)

Release Date

	1990 - 1994 (7)
	1995 - 1999 (16)
	2000 - 2004 (58)
	2005 - 2009 (22)
	2010 - 2014 (67)
	2015 - 2019 (8)
	2020 - 2024 (10)
	2025 - 2029 (4)

Enzyme Classification Name

	Hydrolases (97)
	Transferases (38)
	Ligases (18)
	Lyases (9)
	Oxidoreductases (7)
	Isomerases (5)

Membrane Protein Annotation

	OPM (3)
	MemProtMD (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (147)
	Cyclic (44)
	Dihedral (5)
	Helical (3)
	Icosahedral (2)
	Octahedral (1)

SCOP Classification

	All beta proteins (90)
	Alpha and beta proteins (a/b) (23)
	Alpha and beta proteins (a+b) (9)
	Artifacts (10)
	Small proteins (5)
	All alpha proteins (5)
	Multi-domain proteins (alpha and beta) (5)

AllSelected

1 to 25 of 192 Structures

Page 1 of 8

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1A5H \| pdb_00001a5h	Download File View File

CATALYTIC DOMAIN OF HUMAN TWO-CHAIN TISSUE PLASMINOGEN ACTIVATOR COMPLEX OF A BIS-BENZAMIDINE

Renatus, M., Bode, W., Stubbs, M.T.

(1997) J Biological Chem 272: 21713-21719

Released	1999-04-20
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	TISSUE PLASMINOGEN ACTIVATOR (protein)
Unique Ligands	BBA

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1A5I \| pdb_00001a5i	Download File View File

CATALYTIC DOMAIN OF VAMPIRE BAT (DESMODUS ROTUNDUS) SALIVA PLASMINOGEN ACTIVATOR IN COMPLEX WITH EGR-CMK (GLU-GLY-ARG CHLOROMETHYL KETONE)

Renatus, M., Stubbs, M.T., Bode, W.

(1997) Biochemistry 36: 13483-13493

Released	1999-03-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Desmodus rotundus
Macromolecule	PLASMINOGEN ACTIVATOR (protein)
Unique Ligands	0GJ

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1ADZ \| pdb_00001adz	Download File View File

THE SOLUTION STRUCTURE OF THE SECOND KUNITZ DOMAIN OF TISSUE FACTOR PATHWAY INHIBITOR, NMR, 30 STRUCTURES

Burgering, M.J.M., Orbons, L.P.M.

(1997) J Mol Biology 269: 395-407

Released	1998-02-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	TISSUE FACTOR PATHWAY INHIBITOR (protein)

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1AZ8 \| pdb_00001az8	Download File View File

BOVINE TRYPSIN COMPLEXED TO BIS-PHENYLAMIDINE INHIBITOR

Alexander, R., Smallwood, A.

To be published

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	TRYPSIN (protein)
Unique Ligands	IN4

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1BDA \| pdb_00001bda	Download File View File

CATALYTIC DOMAIN OF HUMAN SINGLE CHAIN TISSUE PLASMINOGEN ACTIVATOR IN COMPLEX WITH DANSYL-EGR-CMK (DANSYL-GLU-GLY-ARG CHLOROMETHYL KETONE)

Bode, W., Renatus, M., Engh, R.A.

(1997) EMBO J 16: 4797-4805

Released	1999-05-11
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Homo sapiens
Macromolecule	SINGLE CHAIN TISSUE TYPE PLASMINOGEN ACTIVATOR (protein)
Unique Ligands	2Z0

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1BTH \| pdb_00001bth	Download File View File

STRUCTURE OF THROMBIN COMPLEXED WITH BOVINE PANCREATIC TRYPSIN INHIBITOR

Van De Locht, A., Bode, W., Stubbs, M.T.

(1997) EMBO J 16: 2977-2984

Released	1997-12-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus
Macromolecule	BOVINE PANCREATIC TRYPSIN INHIBITOR (protein) THROMBIN (protein)

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1CZS \| pdb_00001czs	Download File View File

CRYSTAL STRUCTURE OF THE C2 DOMAIN OF HUMAN COAGULATION FACTOR V: COMPLEX WITH PHENYLMERCURY

Macedo-Ribeiro, S., Bode, W., Huber, R., Kane, W.H., Fuentes-Prior, P.

(1999) Nature 402: 434-439

Released	1999-11-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (COAGULATION FACTOR V) (protein)
Unique Ligands	PHG

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1CZT \| pdb_00001czt	Download File View File

CRYSTAL STRUCTURE OF THE C2 DOMAIN OF HUMAN COAGULATION FACTOR V

Macedo-Ribeiro, S., Bode, W., Huber, R., Kane, W.H., Fuentes-Prior, P.

(1999) Nature 402: 434-439

Released	1999-11-26
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (COAGULATION FACTOR V) (protein)

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1CZV \| pdb_00001czv	Download File View File

CRYSTAL STRUCTURE OF THE C2 DOMAIN OF HUMAN COAGULATION FACTOR V: DIMERIC CRYSTAL FORM

Macedo-Ribeiro, S., Bode, W., Huber, R., Kane, W.H., Fuentes-Prior, P.

(1999) Nature 402: 434-439

Released	1999-11-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (COAGULATION FACTOR V) (protein)

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1DE7 \| pdb_00001de7	Download File View File

INTERACTION OF FACTOR XIII ACTIVATION PEPTIDE WITH ALPHA-THROMBIN: CRYSTAL STRUCTURE OF THE ENZYME-SUBSTRATE COMPLEX

Sadasivan, C., Yee, V.C.

(2000) J Biological Chem 275: 36942-36948

Released	2000-12-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-THROMBIN (HEAVY CHAIN) (protein) ALPHA-THROMBIN (LIGHT CHAIN) (protein) FACTOR XIII ACTIVATION PEPTIDE (28-37) (protein)
Unique Ligands	NA

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1DWB \| pdb_00001dwb	Download File View File

CRYSTALLOGRAPHIC ANALYSIS AT 3.0-ANGSTROMS RESOLUTION OF THE BINDING TO HUMAN THROMBIN OF FOUR ACTIVE SITE-DIRECTED INHIBITORS

Banner, D.W., Hadvary, P.

(1991) J Biological Chem 266: 20085-20093

Released	1994-01-31
Method	X-RAY DIFFRACTION 3.16 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) HIRUDIN IIIA (protein)
Unique Ligands	BEN

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1DWC \| pdb_00001dwc	Download File View File

CRYSTALLOGRAPHIC ANALYSIS AT 3.0-ANGSTROMS RESOLUTION OF THE BINDING TO HUMAN THROMBIN OF FOUR ACTIVE SITE-DIRECTED INHIBITORS

Banner, D.W., Hadvary, P.

(1991) J Biological Chem 266: 20085-20093

Released	1994-01-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) HIRUDIN IIIA (protein)
Unique Ligands	MIT

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1DWD \| pdb_00001dwd	Download File View File

CRYSTALLOGRAPHIC ANALYSIS AT 3.0-ANGSTROMS RESOLUTION OF THE BINDING TO HUMAN THROMBIN OF FOUR ACTIVE SITE-DIRECTED INHIBITORS

Banner, D.W., Hadvary, P.

(1991) J Biological Chem 266: 20085-20093

Released	1994-01-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) HIRUDIN IIIA (protein)
Unique Ligands	MID

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1DWE \| pdb_00001dwe	Download File View File

Crystallographic analysis at 3.0-Angstroms resolution of the binding to human thrombin of four active site-directed inhibitors

Banner, D.W., Hadvary, P.

(1991) J Biological Chem 266: 20085-20093

Released	1994-01-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN heavy chain (protein) ALPHA-THROMBIN light chain (protein) HIRUDIN IIIA (protein)
Unique Ligands	0G6

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1EFZ \| pdb_00001efz	Download File View File

MUTAGENESIS AND CRYSTALLOGRAPHIC STUDIES OF ZYMOMONAS MOBILIS TRNA-GUANINE TRANSGLYCOSYLASE TO ELUCIDATE THE ROLE OF SERINE 103 FOR ENZYMATIC ACTIVITY

Gradler, U., Ficner, R., Garcia, G.A., Stubbs, M.T., Klebe, G., Reuter, K.

(1999) FEBS Lett 454: 142-146

Released	2000-03-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Zymomonas mobilis
Macromolecule	TRNA-GUANINE TRANSGLYCOSYLASE (protein)
Unique Ligands	PRF, ZN

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1ENU \| pdb_00001enu	Download File View File

A new target for shigellosis: Rational design and crystallographic studies of inhibitors of tRNA-guanine transglycosylase

Gradler, U., Gerber, H.D., Goodenough-Lashua, D.M., Garcia, G.A., Ficner, R., Reuter, K., Stubbs, M.T., Klebe, G.

(2001) J Mol Biology 306: 455-467

Released	2000-04-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Zymomonas mobilis
Macromolecule	TRNA-GUANINE TRANSGLYCOSYLASE (protein)
Unique Ligands	APZ, ZN

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1F3E \| pdb_00001f3e	Download File View File

A NEW TARGET FOR SHIGELLOSIS: RATIONAL DESIGN AND CRYSTALLOGRAPHIC STUDIES OF INHIBITORS OF TRNA-GUANINE TRANSGLYCOSYLASE

Graedler, U., Gerber, H.-D., Goodenough-Lashua, D.M., Garcia, G.A.G., Ficner, R., Reuter, K., Stubbs, M.T., Klebe, G.

(2001) J Mol Biology 306: 455-467

Released	2000-06-15
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Zymomonas mobilis
Macromolecule	QUEUINE TRNA-RIBOSYLTRANSFERASE (protein)
Unique Ligands	DPZ, ZN

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1FPH \| pdb_00001fph	Download File View File

THE INTERACTION OF THROMBIN WITH FIBRINOGEN: A STRUCTURAL BASIS FOR ITS SPECIFICITY

Stubbs, M.T., Bode, W.

(1992) Eur J Biochem 206: 187-195

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) FIBRINOPEPTIDE A (protein) HIRUDIN (protein)