RCSB PDB: Search

1DM9 \| pdb_00001dm9	Download File View File

HEAT SHOCK PROTEIN 15 KD

Staker, B.L., Korber, P., Bardwell, J.C.A., Saper, M.A.

(2000) EMBO J 19: 749-757

Released	2000-02-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	HYPOTHETICAL 15.5 KD PROTEIN IN MRCA-PCKA INTERGENIC REGION (protein)
Unique Ligands	SO4

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1EIZ \| pdb_00001eiz	Download File View File

FTSJ RNA METHYLTRANSFERASE COMPLEXED WITH S-ADENOSYLMETHIONINE

Bugl, H., Fauman, E.B., Staker, B.L., Zheng, F., Kushner, S.R., Saper, M.A., Bardwell, J.C.A., Jakob, U.

(2000) Mol Cell 6: 349-360

Released	2000-08-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	FTSJ (protein)
Unique Ligands	SAM

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1EJ0 \| pdb_00001ej0	Download File View File

FTSJ RNA METHYLTRANSFERASE COMPLEXED WITH S-ADENOSYLMETHIONINE, MERCURY DERIVATIVE

Bugl, H., Fauman, E.B., Staker, B.L., Zheng, F., Kushner, S.R., Saper, M.A., Bardwell, J.C.A., Jakob, U.

(2000) Mol Cell 6: 349-360

Released	2000-08-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	FTSJ (protein)
Unique Ligands	HG, SAM

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1K4S \| pdb_00001k4s	Download File View File

HUMAN DNA TOPOISOMERASE I IN COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX

Staker, B.L., Hjerrild, K., Feese, M.D., Behnke, C.A., Burgin Jr., A.B., Stewart, L.J.

(2002) Proc Natl Acad Sci U S A 99: 15387-15392

Released	2002-12-04
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((SPT)PGPAPAPAPAPAP(5IU)P(5IU)P(5IU)P(5IU)PT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCP(5IU)P(5IU))-3' (nucleic acid) 5'-D(APAPAPAPAPTP(IDO)UP(IDO)UP(IDO)UP(IDO)UPCPAPAPAPGP(IDO)UPCP(IDO)UP(IDO)UP(IDO)UP(IDO)UPT)-3' (nucleic acid)

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1K4T \| pdb_00001k4t	Download File View File

HUMAN DNA TOPOISOMERASE I (70 KDA) IN COMPLEX WITH THE POISON TOPOTECAN AND COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX

Staker, B.L., Hjerrild, K., Feese, M.D., Behnke, C.A., Burgin Jr., A.B., Stewart, L.J.

(2002) Proc Natl Acad Sci U S A 99: 15387-15392

Released	2002-12-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((TGP)PGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	HG, PG4, TTC, TTG

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1RR8 \| pdb_00001rr8	Download File View File

Structural Mechanisms of Camptothecin Resistance by Mutations in Human Topoisomerase I

Chrencik, J.E., Staker, B.L., Burgin, A.B., Stewart, L., Redinbo, M.R.

(2004) J Mol Biology 339: 773-784

Released	2004-07-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D(APAPAPAPAPGPAPCPTPTGPGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	TTC, TTG

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1RRJ \| pdb_00001rrj	Download File View File

Structural Mechanisms of Camptothecin Resistance by Mutations in Human Topoisomerase I

Chrencik, J.E., Staker, B.L., Burgin, A.B., Stewart, L., Redinbo, M.R.

(2004) J Mol Biology 339: 773-784

Released	2004-07-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D(APAPAPAPAPGPAPCPTPTGPGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	TTC, TTG

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1SC7 \| pdb_00001sc7	Download File View File

Human DNA Topoisomerase I (70 Kda) In Complex With The Indenoisoquinoline MJ-II-38 and Covalent Complex With A 22 Base Pair DNA Duplex

Staker, B.L., Feese, M.D., Cushman, M., Pommier, Y., Zembower, D., Stewart, L., Burgin, A.B.

(2005) J Med Chem 48: 2336-2345

Released	2005-04-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((TGP)PGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	M38, PG4

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1SEU \| pdb_00001seu	Download File View File

Human DNA Topoisomerase I (70 Kda) In Complex With The Indolocarbazole SA315F and Covalent Complex With A 22 Base Pair DNA Duplex

Staker, B.L., Feese, M.D., Cushman, M., Pommier, Y., Zembower, D., Stewart, L., Burgin, A.B.

(2005) J Med Chem 48: 2336-2345

Released	2005-04-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((TGP)PGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	SA3

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1T8I \| pdb_00001t8i	Download File View File

Human DNA Topoisomerase I (70 Kda) In Complex With The Poison Camptothecin and Covalent Complex With A 22 Base Pair DNA Duplex

Staker, B.L., Feese, M.D., Cushman, M., Pommier, Y., Zembower, D., Stewart, L., Burgin, A.B.

(2005) J Med Chem 48: 2336-2345

Released	2005-05-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((TGP)PGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	EHD

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1TL8 \| pdb_00001tl8	Download File View File

Human DNA topoisomerase I (70 kDa) in complex with the indenoisoquinoline AI-III-52 and covalent complex with a 22 base pair DNA duplex

Ioanoviciu, A., Antony, S., Pommier, Y., Staker, B.L., Stewart, L., Cushman, M.

(2005) J Med Chem 48: 4803-4814

Released	2005-06-21
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((TPC)PGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPGPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	AI3

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3BL7 \| pdb_00003bl7	Download File View File

Synthetic Gene Encoded DcpS bound to inhibitor DG156844

Staker, B.L., Christensen, J., Stewart, L., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D)

(2008) ACS Chem Biol 3: 711-722

Released	2008-10-21
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Scavenger mRNA-decapping enzyme DcpS (protein)
Unique Ligands	DD1

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3BL9 \| pdb_00003bl9	Download File View File

Synthetic Gene Encoded DcpS bound to inhibitor DG157493

Staker, B.L., Christensen, J., Stewart, L., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D)

(2008) ACS Chem Biol 3: 711-722

Released	2008-10-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Scavenger mRNA-decapping enzyme DcpS (protein)
Unique Ligands	DD2

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3BLA \| pdb_00003bla	Download File View File

Synthetic Gene Encoded DcpS bound to inhibitor DG153249

Staker, B.L., Christensen, J., Stewart, L., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D)

(2008) ACS Chem Biol 3: 711-722

Released	2008-10-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Scavenger mRNA-decapping enzyme DcpS (protein)
Unique Ligands	DD3

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3CXK \| pdb_00003cxk	Download File View File

1.7 A Crystal structure of methionine-R-sulfoxide reductase from Burkholderia pseudomallei: crystallization in a microfluidic crystal card.

Lovell, S., Gerdts, C., Staker, B., Craigen, D., Stewart, L., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2008) Acta Crystallogr D Biol Crystallogr 64: 1116-1122

Released	2008-05-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Burkholderia pseudomallei (strain 1710b)
Macromolecule	Methionine-R-sulfoxide reductase (protein)
Unique Ligands	ACT, ZN

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3D63 \| pdb_00003d63	Download File View File

Crystal structure of inorganic pyrophosphatase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-07-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)

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3D6B \| pdb_00003d6b	Download File View File

2.2 A crystal structure of glutaryl-CoA dehydrogenase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 1060-1069

Released	2008-06-03
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Glutaryl-CoA dehydrogenase (protein)
Unique Ligands	54D

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3DAH \| pdb_00003dah	Download File View File

2.3 A crystal structure of ribose-phosphate pyrophosphokinase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-06-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Ribose-phosphate pyrophosphokinase (protein)
Unique Ligands	AMP, PO4

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3DMS \| pdb_00003dms	Download File View File

1.65A crystal structure of isocitrate dehydrogenase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) Biochemistry 50: 8103-8106

Released	2008-07-15
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Burkholderia pseudomallei
Macromolecule	Isocitrate dehydrogenase [NADP] (protein)

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3EIY \| pdb_00003eiy	Download File View File

Crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei with bound pyrophosphate

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2009) PLoS Comput Biol 5: e1000530-e1000530

Released	2008-09-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)
Unique Ligands	K, NA, PEG, PG4, POP

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3EIZ \| pdb_00003eiz	Download File View File

Crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei, H32 crystal form

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)

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3EJ0 \| pdb_00003ej0	Download File View File

Crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei with bound N-(pyridin-3-ylmethyl) aniline, H32 crystal form

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2009) PLoS Comput Biol 5: e1000530-e1000530

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)
Unique Ligands	11X

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3EJ2 \| pdb_00003ej2	Download File View File

Crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei with bound 5-amino-1-(4-chlorophenyl)-1h-pyrazole-4-carbonitrile, H32 crystal form

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-09-30
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)
Unique Ligands	928

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3EK2 \| pdb_00003ek2	Download File View File

Crystal structure of eonyl-(acyl carrier protein) reductase from burkholderia pseudomallei 1719b

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Enoyl-(Acyl-carrier-protein) reductase (NADH) (protein)
Unique Ligands	CL

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3EOM \| pdb_00003eom	Download File View File

2.4 A crystal structure of native glutaryl-coa dehydrogenase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 1060-1069

Released	2008-10-21
Method	X-RAY DIFFRACTION 2.398 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Glutaryl-CoA dehydrogenase (protein)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DM9 | pdb_00001dm9

1EIZ | pdb_00001eiz

1EJ0 | pdb_00001ej0

1K4S | pdb_00001k4s

1K4T | pdb_00001k4t

1RR8 | pdb_00001rr8

1RRJ | pdb_00001rrj

1SC7 | pdb_00001sc7

1SEU | pdb_00001seu

1T8I | pdb_00001t8i

1TL8 | pdb_00001tl8

3BL7 | pdb_00003bl7

3BL9 | pdb_00003bl9

3BLA | pdb_00003bla

3CXK | pdb_00003cxk

3D63 | pdb_00003d63

3D6B | pdb_00003d6b

3DAH | pdb_00003dah

3DMS | pdb_00003dms

3EIY | pdb_00003eiy

3EIZ | pdb_00003eiz

3EJ0 | pdb_00003ej0

3EJ2 | pdb_00003ej2

3EK2 | pdb_00003ek2

3EOM | pdb_00003eom