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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Rivoal, M."

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Search Summary

This query matches 103 Structures.

Refinements

Structure Determination Methodology

experimental (103)

Scientific Name of Source Organism

	Homo sapiens (51)
	Trypanosoma brucei brucei TREU927 (9)
	synthetic construct (9)
	Saccharomyces cerevisiae (6)
	Saccharomyces cerevisiae S288C (6)
	Plasmodium falciparum 3D7 (5)
	Trypanosoma brucei brucei (5)
	Escherichia coli (3)
	Leishmania major (3)
	Thermoplasma acidophilum (3)

More...

Taxonomy

	Eukaryota (93)
	other sequences (9)
	Bacteria (8)
	Eukaryota (eukaryotes) (6)
	Archaea (4)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (95)
	ELECTRON MICROSCOPY (7)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (103)
	DNA (4)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (5)
	1.5 - 2.0 (25)
	2.0 - 2.5 (27)
	2.5 - 3.0 (34)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)
	4.0 - 4.5 (3)
	> 4.5 (1)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (5)
	2010 - 2014 (25)
	2015 - 2019 (24)
	2020 - 2024 (44)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (44)
	Transferases (18)
	Oxidoreductases (6)
	Isomerases (2)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Cyclic (75)
	Asymmetric (26)
	Dihedral (4)

SCOP Classification

	Alpha and beta proteins (a+b) (16)
	All beta proteins (7)
	All alpha proteins (16)
	Artifacts (13)
	Alpha and beta proteins (a/b) (4)

AllSelected

1 to 25 of 103 Structures

Page 1 of 5

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1LA1 \| pdb_00001la1	Download File View File

Gro-EL Fragment (Apical Domain) Comprising Residues 188-379

Ashcroft, A.E., Brinker, A., Coyle, J.E., Weber, F., Kaiser, M., Moroder, L., Parsons, M.R., Jager, J., Hartl, U.F., Hayer-Hartl, M., Radford, S.E.

(2002) J Biological Chem 277: 33115-33126

Released	2002-04-03
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Escherichia coli
Macromolecule	GroEL (protein)

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1N6D \| pdb_00001n6d	Download File View File

Tricorn protease in complex with tetrapeptide chloromethyl ketone derivative

Kim, J.-S., Groll, M., Huber, R., Brandstetter, H.

(2002) J Mol Biology 324: 1041-1050

Released	2002-12-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermoplasma acidophilum synthetic construct
Macromolecule	RVRK (protein) Tricorn protease (protein)
Unique Ligands	D10

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1N6E \| pdb_00001n6e	Download File View File

tricorn protease in complex with a tridecapeptide chloromethyl ketone derivative

Kim, J.-S., Groll, M., Huber, R., Brandstetter, H.

(2002) J Mol Biology 324: 1041-1050

Released	2002-12-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermoplasma acidophilum synthetic construct
Macromolecule	DQTQKAAAELTFF (protein) Tricorn protease (protein)

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1N6F \| pdb_00001n6f	Download File View File

tricorn protease in complex with Z-Phe-diketo-Arg-Glu-Phe

Kim, J.-S., Groll, M., Huber, R., Brandstetter, H.

(2002) J Mol Biology 324: 1041-1050

Released	2002-12-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermoplasma acidophilum
Macromolecule	tricorn protease (protein)
Unique Ligands	DKT

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2GPL \| pdb_00002gpl	Download File View File

TMC-95 based biphenyl-ether macrocycles: specific proteasome inhibitors

Groll, M., Goetz, M., Kaiser, M., Weyher, E., Moroder, M.

(2006) Chem Biol 13: 607-614

Released	2006-07-11
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 14
Unique Ligands	BIQ

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2Y8C \| pdb_00002y8c	Download File View File

Plasmodium falciparum dUTPase in complex with a trityl ligand

Baragana, B., McCarthy, O., Sanchez, P., Bosch, C., Kaiser, M., Brun, R., Whittingham, J.L., Roberts, S., Zhou, X.-X., Wilson, K.S., Johansson, N.G., Gonzalez-Pacanowska, D., Gilbert, I.H.

(2011) Bioorg Med Chem 19: 2378

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE (protein)
Unique Ligands	DUQ, SO4

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2ZCY \| pdb_00002zcy	Download File View File

yeast 20S proteasome:syringolin A-complex

Groll, M., Dudler, R., Kaiser, M.

(2008) Nature 452: 755-758

Released	2008-04-08
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 14
Unique Ligands	SRG

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3BDM \| pdb_00003bdm	Download File View File

yeast 20S proteasome:glidobactin A-complex

Groll, M., Dudler, R., Kaiser, M.

(2008) Nature 452: 755-758

Released	2008-04-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 14
Unique Ligands	GDT

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3CU8 \| pdb_00003cu8	Download File View File

Impaired binding of 14-3-3 to Raf1 is linked to Noonan and LEOPARD syndrome

Schumacher, B., Weyand, M., Kuhlmann, J., Ottmann, C.

(2010) Mol Cell Biol 30: 4698-4711

Released	2009-05-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	14-3-3 protein zeta/delta (protein) RAF proto-oncogene serine/threonine-protein kinase (protein)
Unique Ligands	MG, PPI

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3GPJ \| pdb_00003gpj	Download File View File

Crystal structure of the yeast 20S proteasome in complex with syringolin B

Groll, M., Huber, R., Kaiser, M.

(2009) Proc Natl Acad Sci U S A 106: 6507-6512

Released	2009-06-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 14
Unique Ligands	SY2

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3I6S \| pdb_00003i6s	Download File View File

Crystal Structure of the plant subtilisin-like protease SBT3

Rose, R., Ottmann, C.

(2009) Proc Natl Acad Sci U S A 106: 17223-17228

Released	2010-01-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Solanum lycopersicum
Macromolecule	Subtilisin-like protease (protein)
Unique branched monosaccharides	FUC, NAG

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3I74 \| pdb_00003i74	Download File View File

Crystal Structure of the plant subtilisin-like protease SBT3 in complex with a chloromethylketone inhibitor

Rose, R., Ottmann, C.

(2009) Proc Natl Acad Sci U S A 106: 17223-17228

Released	2010-01-19
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Solanum lycopersicum
Macromolecule	ACE-PHE-GLU-LYS-ALA chloromethylketone INHIBITOR (protein) Subtilisin-like protease (protein)
Unique branched monosaccharides	FUC, NAG

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3IQJ \| pdb_00003iqj	Download File View File

Crystal Structure of human 14-3-3 sigma in Complex with Raf1 peptide (10mer)

Ottmann, C., Weyand, M.

(2010) Mol Cell Biol 30: 4698-4711

Released	2010-09-01
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	10-mer peptide from RAF proto-oncogene serine/threonine-protein kinase (protein) 14-3-3 protein sigma (protein)
Unique Ligands	CL, MG

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3IQU \| pdb_00003iqu	Download File View File

Crystal Structure of human 14-3-3 sigma in Complex with Raf1 peptide (6mer)

Ottmann, C., Weyand, M.

(2010) Mol Cell Biol 30: 4698-4711

Released	2010-09-01
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Homo sapiens
Macromolecule	14-3-3 protein sigma (protein) 6-mer from RAF proto-oncogene serine/threonine-protein kinase (protein)
Unique Ligands	CL, MG

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3IQV \| pdb_00003iqv	Download File View File

Crystal Structure of human 14-3-3 sigma in Complex with Raf1 peptide (6mer) and stabilisator Fusicoccin

Ottmann, C., Weyand, M.

(2010) Mol Cell Biol 30: 4698-4711

Released	2010-09-01
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	14-3-3 protein sigma (protein) 6-mer peptide from RAF proto-oncogene serine/threonine-protein kinase (protein)
Unique Ligands	CL, FSC, MG

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3NKX \| pdb_00003nkx	Download File View File

Impaired binding of 14-3-3 to Raf1 is linked to Noonan and LEOPARD syndrome

Schumacher, B., Weyand, M., Ottmann, C.

(2010) Mol Cell Biol 30: 4698-4711

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	14-3-3 protein zeta/delta (protein) Peptide of RAF proto-oncogene serine/threonine-protein kinase (protein)
Unique Ligands	PPI

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3NUM \| pdb_00003num	Download File View File

Substrate induced remodeling of the active site regulates HtrA1 activity

Truebestein, L., Tennstaedt, A., Hauske, P., Krojer, T., Kaiser, M., Clausen, T., Ehrmann, M.

(2011) Nat Struct Mol Biol 18: 386-388

Released	2011-02-23
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Serine protease HTRA1 (protein)

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3NWU \| pdb_00003nwu	Download File View File

Substrate induced remodeling of the active site regulates HtrA1 activity

Truebestein, L., Tennstaedt, A., Hauske, P., Krojer, T., Kaiser, M., Clausen, T., Ehrmann, M.

(2011) Nat Struct Mol Biol 18: 386-388

Released	2011-02-23
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Serine protease HTRA1 (protein)
Unique Ligands	SO4

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3NZI \| pdb_00003nzi	Download File View File

Substrate induced remodeling of the active site regulates HtrA1 activity

Truebestein, L., Tennstaedt, A., Hauske, P., Krojer, T., Kaiser, M., Clausen, T., Ehrmann, M.

(2011) Nat Struct Mol Biol 18: 386-388

Released	2011-02-23
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Citrate synthase (protein) Serine protease HTRA1 (protein)

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3O8I \| pdb_00003o8i	Download File View File

Structure of 14-3-3 isoform sigma in complex with a C-Raf1 peptide and a stabilizing small molecule fragment

Ottmann, C., Rose, R., Kaiser, M., Kuhenne, P.

(2010) Mol Cell Biol 30: 4698-4711

Released	2010-09-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	14-3-3 binding site peptide of RAF proto-oncogene serine/threonine-protein kinase (protein) 14-3-3 protein sigma (protein)
Unique Ligands	M1T

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3T60 \| pdb_00003t60	Download File View File

5'-Diphenyl Nucleoside Inhibitors of Plasmodium falciparum dUTPase

Hampton, S.E., Baragana, B., Schipani, A., Bosch-Navarrete, C., Musso-Buendia, A., Recio, E., Kaiser, M., Whittingham, J.L., Roberts, S.M., Shevtsov, M., Brannigan, J.A., Kahnberg, P., Brun, R., Wilson, K.S., Gonzalez-Pacanowska, D., Johansson, N.G., Gilbert, I.H.

(2011) ChemMedChem 6: 1816-1831

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.396 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Deoxyuridine 5'-triphosphate nucleotidohydrolase, putative (protein)
Unique Ligands	DUA, GOL

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3T64 \| pdb_00003t64	Download File View File

5'-Diphenyl Nucleoside Inhibitors of Plasmodium falciparum dUTPase

(2011) ChemMedChem 6: 1816-1831

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli Plasmodium falciparum 3D7
Macromolecule	5'-(BENZHYDRYLAMINO)-2',5'-DIDEOXYURIDINE (protein) Deoxyuridine 5'-triphosphate nucleotidohydrolase, putative (protein)
Unique Ligands	DU3, SO4

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3T6Y \| pdb_00003t6y	Download File View File

5'-Diphenyl Nucleoside Inhibitors of Plasmodium falciparum dUTPase

(2011) ChemMedChem 6: 1816-1831

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Plasmodium falciparum 3D7 synthetic construct
Macromolecule	Deoxyuridine 5'-triphosphate nucleotidohydrolase, putative (protein) peptide ALA-HIS-ALA (protein)
Unique Ligands	DU2, SO4

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3T70 \| pdb_00003t70	Download File View File

5'-Diphenyl Nucleoside Inhibitors of Plasmodium falciparum dUTPase

(2011) ChemMedChem 6: 1816-1831

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Plasmodium falciparum 3D7 synthetic construct
Macromolecule	Deoxyuridine 5'-triphosphate nucleotidohydrolase, putative (protein) PEPTIDE GLY-HIS-GLY (protein)
Unique Ligands	DU4, SO4