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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 138 Structures.

Refinements

Structure Determination Methodology

experimental (138)

Scientific Name of Source Organism

	Homo sapiens (53)
	synthetic construct (23)
	Escherichia coli (22)
	Bacillus paralicheniformis (20)
	Staphylococcus aureus subsp. aureus COL (9)
	Sinorhizobium fredii CCBAU 83666 (5)
	Arabidopsis thaliana (4)
	Escherichia coli K-12 (4)
	JC polyomavirus (4)
	Escherichia coli O157:H7 (3)

More...

Taxonomy

	Bacteria (72)
	Eukaryota (64)
	other sequences (23)
	Monodnaviria (4)
	Duplodnaviria (3)

Experimental Method

	X-RAY DIFFRACTION (121)
	ELECTRON MICROSCOPY (12)
	SOLUTION NMR (5)

Polymer Entity Type

	Protein (138)
	DNA (14)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (33)
	2.0 - 2.5 (38)
	2.5 - 3.0 (41)
	3.0 - 3.5 (10)
	3.5 - 4.0 (5)
	4.0 - 4.5 (2)
	> 4.5 (2)

Release Date

	1995 - 1999 (9)
	2000 - 2004 (5)
	2005 - 2009 (9)
	2010 - 2014 (12)
	2015 - 2019 (42)
	2020 - 2024 (61)

Enzyme Classification Name

	Isomerases (15)
	Ligases (13)
	Hydrolases (11)
	Transferases (7)
	Lyases (3)
	Oxidoreductases (3)
	Translocases (1)

Membrane Protein Annotation

	PDBTM (18)
	OPM (9)
	MemProtMD (9)
	mpstruc (8)

Symmetry Type

	Asymmetric (71)
	Cyclic (53)
	Dihedral (20)

SCOP Classification

	Alpha and beta proteins (a/b) (46)
	All alpha proteins (14)
	Artifacts (9)
	Membrane and cell surface proteins and peptides (5)
	All beta proteins (1)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 138 Structures

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1DBQ \| pdb_00001dbq	Download File View File

DNA-BINDING REGULATORY PROTEIN

Schumacher, M.A., Choi, K.Y., Lu, F., Zalkin, H., Brennan, R.G.

(1995) Cell 83: 147-155

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	PURINE REPRESSOR (protein)
Unique Ligands	MG

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1JFS \| pdb_00001jfs	Download File View File

PURINE REPRESSOR MUTANT-HYPOXANTHINE-PURF OPERATOR COMPLEX

Huffman, J.L., Lu, F., Zalkin, H., Brennan, R.G.

(2002) Biochemistry 41: 511-520

Released	2002-02-08
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	PURINE NUCLEOTIDE SYNTHESIS REPRESSOR (protein) 5'-D(TPAPCPGPCPAPAPAPCPGPTPTPTPGPCPGP*T)-3' (nucleic acid)
Unique Ligands	HPA

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1JFT \| pdb_00001jft	Download File View File

PURINE REPRESSOR MUTANT-HYPOXANTHINE-PURF OPERATOR COMPLEX

Huffman, J.L., Lu, F., Zalkin, H., Brennan, R.G.

(2002) Biochemistry 41: 511-520

Released	2002-02-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	PURINE NUCLEOTIDE SYNTHESIS REPRESSOR (protein) 5'-D(TPAPCPGPCPAPAPAPCPGPTPTPTPGPCPGP*T)-3' (nucleic acid)
Unique Ligands	HPA, PO4

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1JH9 \| pdb_00001jh9	Download File View File

PURINE REPRESSOR MUTANT-HYPOXANTHINE-PURF OPERATOR COMPLEX

Huffman, J.L., Lu, F., Zalkin, H., Brennan, R.G.

(2002) Biochemistry 41: 511-520

Released	2002-02-08
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Escherichia coli
Macromolecule	PURINE NUCLEOTIDE SYNTHESIS REPRESSOR (protein) 5'-D(APAPCPGPAPAPAPAPCPGPTPTPTPTPCPGP*T)-3' (nucleic acid)
Unique Ligands	HPA, PO4

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1JHZ \| pdb_00001jhz	Download File View File

Purine Repressor Mutant Corepressor Binding Domain Structure

Huffman, J.L., Lu, F., Zalkin, H., Brennan, R.G.

(2002) Biochemistry 41: 511-520

Released	2002-02-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	PURINE NUCLEOTIDE SYNTHESIS REPRESSOR (protein)
Unique Ligands	MG

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1RJB \| pdb_00001rjb	Download File View File

Crystal Structure of FLT3

Griffith, J., Black, J., Faerman, C., Swenson, L., Wynn, M., Lu, F., Lippke, J., Saxena, K.

(2004) Mol Cell 13: 169-178

Released	2004-02-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	FL cytokine receptor (protein)

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1RKB \| pdb_00001rkb	Download File View File

The structure of adrenal gland protein AD-004

Ren, H., Liang, Y., Bennett, M., Su, X.D.

(2005) Proc Natl Acad Sci U S A 102: 303-308

Released	2005-01-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Protein AD-004 (protein)
Unique Ligands	LI, SO4

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1VPW \| pdb_00001vpw	Download File View File

STRUCTURE OF THE PURR MUTANT, L54M, BOUND TO HYPOXANTHINE AND PURF OPERATOR DNA

Arvidson, D.N., Lu, F., Faber, C., Zalkin, H., Brennan, R.G.

(1998) Nat Struct Biol 5: 436-441

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	PURINE REPRESSOR (protein) DNA (5'-D(TPAPCPGPCPAPAPAPCPGPTPTPTPGPCPGP*T )-3') (nucleic acid)
Unique Ligands	HPA

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2BBO \| pdb_00002bbo	Download File View File

Human NBD1 with Phe508

Lewis, H.A., Kearins, M.C., Conners, K., Zhao, X., Lu, F., Sauder, J.M., Emtage, S.

(2010) J Mol Biology 396: 406-430

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ATP, MG

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2BBS \| pdb_00002bbs	Download File View File

Human deltaF508 NBD1 with three solubilizing mutations

Lewis, H.A., Kearins, M.C., Conners, K., Zhao, X., Lu, F., Sauder, J.M., Emtage, S.

(2010) J Mol Biology 396: 406-430

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ATP, MG

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2BBT \| pdb_00002bbt	Download File View File

Human deltaF508 NBD1 with two solublizing mutations.

Lewis, H.A., Kearins, M.C., Conners, K., Zhao, X., Lu, F., Sauder, J.M., Emtage, S.

(2010) J Mol Biology 396: 406-430

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ATP, MG

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2EXX \| pdb_00002exx	Download File View File

Crystal structure of HSCARG from Homo sapiens in complex with NADP

Dai, X., Chen, Q., Yao, D., Liang, Y., Dong, Y., Gu, X., Zheng, X., Luo, M.

(2007) Proc Natl Acad Sci U S A 104: 8809-8814

Released	2006-11-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	HSCARG protein (protein)
Unique Ligands	GOL, NAP

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2PUA \| pdb_00002pua	Download File View File

CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICES

Schumacher, R.G., Choi, K.Y., Zalkin, H., Brennan, M.A.

(1994) Science 266: 763-770

Released	1998-05-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	PURINE REPRESSOR (protein) DNA (5'-D(TPAPCPGPCPAPAPAPCPGPTPTPTPGPCPGP*T )-3') (nucleic acid)
Unique Ligands	6MP

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2PUB \| pdb_00002pub	Download File View File

CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICES

Schumacher, R.G., Choi, K.Y., Zalkin, H., Brennan, M.A.

(1994) Science 266: 763-770

Released	1998-05-06
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	PURINE REPRESSOR (protein) DNA (5'-D(TPAPCPGPCPAPAPAPCPGPTPTPTPGPCPGP*T )-3') (nucleic acid)
Unique Ligands	ADE

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2PUC \| pdb_00002puc	Download File View File

CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICES

Schumacher, M.A., Choi, K.Y., Zalkin, H., Brennan, R.G.

(1994) Science 266: 763-770

Released	1998-05-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (PURINE REPRESSOR) (protein) DNA (5'-D(TPAPCPGPCPAPAPAPCPGPTPTPTPGPCPGP*T )-3') (nucleic acid)
Unique Ligands	GUN

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2PUD \| pdb_00002pud	Download File View File

CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICES

Schumacher, M.A., Choi, K.Y., Zalkin, H., Brennan, R.G.

(1994) Science 266: 763-770

Released	1998-05-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (PURINE REPRESSOR) (protein) DNA (5'-D(TPAPCPGPCPAPAPAPCPGPTPTPTPGPCPGP*T )-3') (nucleic acid)
Unique Ligands	HPA

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2PUE \| pdb_00002pue	Download File View File

CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICES

Lu, F., Schumacher, M.A., Arvidson, D.N., Haldimann, A., Wanner, B.L., Zalkin, H., Brennan, R.G.

(1998) Biochemistry 37: 971-982

Released	1998-05-06
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (PURINE REPRESSOR ) (protein) DNA (5'-D(TPAPCPGPCPAPAPAPCPGPTPTPTPGPCPGP*T )-3') (nucleic acid)
Unique Ligands	ADE

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2PUF \| pdb_00002puf	Download File View File

CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICES

Lu, F., Schumacher, M.A., Arvidson, D.N., Haldimann, A., Wanner, B.L., Zalkin, H., Brennan, R.G.

(1998) Biochemistry 37: 971-982

Released	1998-05-06
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (PURINE REPRESSOR) (protein) DNA (5'-D(TPAPCPGPCPAPAPAPCPGPTPTPTPGPCPGP*T )-3') (nucleic acid)
Unique Ligands	GUN

Explore in 3D

2PUG \| pdb_00002pug	Download File View File

CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICES

Lu, F., Schumacher, M.A., Arvidson, D.N., Haldimann, A., Wanner, B.L., Zalkin, H., Brennan, R.G.

(1998) Biochemistry 37: 971-982

Released	1998-05-06
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (PURINE REPRESSOR) (protein) DNA (5'-D(TPAPCPGPCPAPAPAPCPGPTPTPTPGPCPGP*T )-3') (nucleic acid)
Unique Ligands	HPA

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2PZE \| pdb_00002pze	Download File View File

Minimal human CFTR first nucleotide binding domain as a head-to-tail dimer

Atwell, S., Conners, K., Emtage, S., Gheyi, T., Glenn, N.R., Hendle, J., Lewis, H.A., Lu, F., Rodgers, L.A., Romero, R., Sauder, J.M., Smith, D., Tien, H., Wasserman, S.R., Zhao, X.

(2010) Protein Eng Des Sel 23: 375-384

Released	2007-10-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ATP, MG

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2PZF \| pdb_00002pzf	Download File View File

Minimal human CFTR first nucleotide binding domain as a head-to-tail dimer with delta F508

Atwell, S., Conners, K., Emtage, S., Gheyi, T., Glenn, N.R., Hendle, J., Lewis, H.A., Lu, F., Rodgers, L.A., Romero, R., Sauder, J.M., Smith, D., Tien, H., Wasserman, S.R., Zhao, X.

(2010) Protein Eng Des Sel 23: 375-384

Released	2007-10-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ATP, MG

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2PZG \| pdb_00002pzg	Download File View File

Minimal human CFTR first nucleotide binding domain as a monomer

Atwell, S., Conners, K., Emtage, S., Gheyi, T., Glenn, N.R., Hendle, J., Lewis, H.A., Lu, F., Rodgers, L.A., Romero, R., Sauder, J.M., Smith, D., Tien, H., Wasserman, S.R., Zhao, X.

(2010) Protein Eng Des Sel 23: 375-384

Released	2007-10-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ATP, GOL, MG

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3GD7 \| pdb_00003gd7	Download File View File

Crystal structure of human NBD2 complexed with N6-Phenylethyl-ATP (P-ATP)

Atwell, S., Antonysamy, S., Conners, K., Emtage, S., Gheyi, T., Lewis, H.A., Lu, F., Sauder, J.M., Wasserman, S.R., Zhao, X.

To be published

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli K-12 Homo sapiens
Macromolecule	Fusion complex of Cystic fibrosis transmembrane conductance regulator, residues 1193-1427 and Maltose/maltodextrin import ATP-binding protein malK, residues 219-371 (protein)
Unique Ligands	B44

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3JTY \| pdb_00003jty	Download File View File

Crystal structure of a BenF-like porin from Pseudomonas fluorescens Pf-5

Sampathkumar, P., Lu, F., Zhao, X., Wasserman, S., Iuzuka, M., Bain, K., Rutter, M., Gheyi, T., Atwell, S., Luz, J., Gilmore, J., Sauder, J.M., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2010) Proteins 78: 3056-3062

Released	2009-10-20
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Pseudomonas protegens Pf-5
Macromolecule	BenF-like porin (protein)
Unique Ligands	LDA

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3L1L \| pdb_00003l1l	Download File View File

Structure of Arg-bound Escherichia coli AdiC

Gao, X., Zhou, L., Shi, Y.

(2010) Nature 463: 828-832

Released	2010-02-02
Method	X-RAY DIFFRACTION 3.002 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Arginine/agmatine antiporter (protein)
Unique Ligands	ARG, BNG

1 to 25 of 138 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DBQ | pdb_00001dbq

1JFS | pdb_00001jfs

1JFT | pdb_00001jft

1JH9 | pdb_00001jh9

1JHZ | pdb_00001jhz

1RJB | pdb_00001rjb

1RKB | pdb_00001rkb

1VPW | pdb_00001vpw

2BBO | pdb_00002bbo

2BBS | pdb_00002bbs

2BBT | pdb_00002bbt

2EXX | pdb_00002exx

2PUA | pdb_00002pua

2PUB | pdb_00002pub

2PUC | pdb_00002puc

2PUD | pdb_00002pud

2PUE | pdb_00002pue

2PUF | pdb_00002puf

2PUG | pdb_00002pug

2PZE | pdb_00002pze

2PZF | pdb_00002pzf

2PZG | pdb_00002pzg

3GD7 | pdb_00003gd7

3JTY | pdb_00003jty

3L1L | pdb_00003l1l